Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00273 ATGAGGGGAAGAAGCTACAGTTATAGTCCGTCACCTCCAAGGCATTATAGCCGAAGAAGGCGCAGTCCCAGCCCTAGGGGCAGACACAGAGGACGTGATAGAGATTTGCCAACTAGTCTTTTGGTTCGAAACCTTCACAGAGATTGTAGGGCGGAAGATCTGCATGGTCCATTTGGCCAATTTGGTCCTGTTAAGGACGTTTACCTGCCTCGAGATTATTATACTGGGGATCCAAGAGGTTTCGGGTTTGTCCAGTATGTGGACCCAGCTGATGCTGCGGATGCAAAACATCACATGGACGGTCAAATTCTTCTTGGTCGCGAGTTAACTGTAGTGTTTGCTGAAGAGAACAGGAAGAAACCTTCTGAAATGAGAGCAAGGGAACGGAGAAGGCGATCGCCTCGAACCTATTCTCCTAGTCCAGACTATTCACCTTCTCCAAGACGAAGACGAAATTACAGGTCAATCTCACCAAGGGGCAGAAAATATAGCGATCGATCATACTCTAGATCACCTTATGGGTCAAGAAGCCGCAGCAGAAGCAGGAGTTATGGCAGAAGCAGAAGTTACAGCAGGAGCTTGAGCAGAAGTCCTGGCTACTCTAGGTGA 609 0.4844 MRGRSYSYSPSPPRHYSRRRRSPSPRGRHRGRDRDLPTSLLVRNLHRDCRAEDLHGPFGQFGPVKDVYLPRDYYTGDPRGFGFVQYVDPADAADAKHHMDGQILLGRELTVVFAEENRKKPSEMRARERRRRSPRTYSPSPDYSPSPRRRRNYRSISPRGRKYSDRSYSRSPYGSRSRSRSRSYGRSRSYSRSLSRSPGYSR 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00273 202 SUPERFAMILY RNA-binding domain, RBD 12 129 IPR035979 GO:0003676
Viun7g00273 202 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 109 IPR000504 GO:0003723
Viun7g00273 202 MobiDBLite consensus disorder prediction 116 136 - -
Viun7g00273 202 MobiDBLite consensus disorder prediction 1 36 - -
Viun7g00273 202 Gene3D - 2 130 IPR012677 -
Viun7g00273 202 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723
Viun7g00273 202 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 33 192 - -
Viun7g00273 202 MobiDBLite consensus disorder prediction 116 202 - -
Viun7g00273 202 SMART rrm1_1 39 112 IPR000504 GO:0003723
Viun7g00273 202 MobiDBLite consensus disorder prediction 168 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00273 Viun-Chr7 1910299 1913400 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00273 38 199 Eukaryotic Initiation Factors Gene Family AT4G34110 24.405 9.79e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00273 K12900 - gmx:100816913 184.882