Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00269 ATGGAGTTGCCTTCAAATAACTTGGATGTTGGGCCTAAGAAGATTGAACACGAGAAAGACGAAGGGCCTTTGTTGCATTGTGATTTTTGTGACATAGAAGTAGTTCACAAACTGGCTCAAATGTTCATGCCAGCACTAGCCTGTGCCTGTGTTGATAACACAACAGGAGATCCCTTCAAGACCCCTGGTTTTGTGGCTGTTGATTTGAGAAAGGAGATGATAGAATTTGTCACCCAAAAGAGTGAATTATTTGTTGCTGAGTCTATTATCACTGAGGATGTTCCTGACGGTGAAGCTTTGGAACACCCTTTTGATATCATTTCTTTTTTTGTTGATGAGTTTGTTAATTCAAAGAGAAATTTGTTGAGTCAGTTTTCAGGGTGGTTACTAAGTGATAAGAGAGAGGACAAAATAGATGATTTTGTTCAGGAGATGGAAATAAATGGTTTTTGGCCACTGGATAGAAGAGAAACACTTGCCAAAGATTTGCTTAAGAACGTGGACTTCAAAAGCTCATTTCATTGTGGTATGAGTTTTAAATCTGCAGAAGATCTTGCCAACCATGTTGATGCTTGCAACTTCAGGTCTGTGGTATGCCAAAATCTCGGGTGCAATGATAGATTCAGTGCTGGTCAATTGAAAGAGCATGATTCAATTTGTGATTTCAAGATAGTTCCATGTGAACAAAAGTGCACAGCCAACATCTTGCGACGTGACATGGATAGGCACTGCATAACTGTTTGTCCACTGAAGCTTGTGGATTGCCCTTTCTCTGCCATAGGTTGTAGATCTACAATTGGGCAAAGTATAATAAGAAAACATTGTTCAGATGATATTGAGTCTCACTTACTACTAATACTTAAAGGCATCCATCAGCAAGCATCAGACAAAGATCTTCAAAGACGTGTGGAGCAAATTGTACAGGCATCATCAAGAAGCAAATTAGCAGAGGCTAAGGATGTGAGATCTTTTAGAAGTATTGTCAAGGACCTTGAAATTAAGCTAGGGCCTCTGGAAGTGAGTGACAAAGAGAAAACTTGTGCAGAAGAAGTTGCCAAAAAAAGTGAAGACAATAGAACTTCTGCAGCAAAGGGTGTCAATAAAGAGGATAGTGAACACACGGAAAATGGAAGACAAGGATAG 1143 0.3963 MELPSNNLDVGPKKIEHEKDEGPLLHCDFCDIEVVHKLAQMFMPALACACVDNTTGDPFKTPGFVAVDLRKEMIEFVTQKSELFVAESIITEDVPDGEALEHPFDIISFFVDEFVNSKRNLLSQFSGWLLSDKREDKIDDFVQEMEINGFWPLDRRETLAKDLLKNVDFKSSFHCGMSFKSAEDLANHVDACNFRSVVCQNLGCNDRFSAGQLKEHDSICDFKIVPCEQKCTANILRRDMDRHCITVCPLKLVDCPFSAIGCRSTIGQSIIRKHCSDDIESHLLLILKGIHQQASDKDLQRRVEQIVQASSRSKLAEAKDVRSFRSIVKDLEIKLGPLEVSDKEKTCAEEVAKKSEDNRTSAAKGVNKEDSEHTENGRQG 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00269 380 Pfam TRAF-type zinc finger 216 274 IPR001293 GO:0008270
Viun7g00269 380 PANTHER TNF RECEPTOR ASSOCIATED FACTOR 24 370 - -
Viun7g00269 380 MobiDBLite consensus disorder prediction 349 380 - -
Viun7g00269 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 218 IPR013083 -
Viun7g00269 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 219 280 IPR013083 -
Viun7g00269 380 ProSiteProfiles Zinc finger TRAF-type profile. 216 263 IPR001293 GO:0008270
Viun7g00269 380 SUPERFAMILY TRAF domain-like 197 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00269 Viun-Chr7 1894239 1897218 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun7g00269 zf-TRAF 5.5e-11 CL0389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00269 - - vra:106769987 719.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g00269 7 1894239 1897218 Viun7g00269 7 1894239 1897218 ECH
Viun1g02665 1 36460182 36463007 Viun7g00269 7 1894239 1897218 PCT