Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00228 ATGGAGGTTCCAGAAATGGGAGGCAAGACTGAAAGCCGTTTGACATCGGCAGCAGCCTTTGTGGAAGGGGGGATTCAAGACGCATGTGATGATTCTTGCAGCATATGCCTTGAAAATTTTAGCAAAAGTGATCCTGCAACTGTCACTAATTGCAGGCATGACTTCCATCTGCAGTGCATTCTTGAATGGTGCCAGAGAAGCTCTCAATGCCCTATGTGTTGGCAAGCTATCAGCTTGAAGGATGCTACCAGTCAAGAACTGCTCGAGGCAGTAGAGCAGGAGAGGAGCTTGAGGAATATGCCATCCAGAAATGCTTCAATTTTTCATCTTTCGCAGCACGAATTTCAGCGTTTACCAGTGGAGCGTGATTCTGATATTGAAGAGCGAATCCTTCGACATTTAGCTGCTGCAGCATCAATGAGGAGAGCACACCCTCTTGGTCGGAGGGAAAGTCAACGATCTAGGTCATCTTCTCTTGGCAATGTACACTCCTTTGTGTACGCAACTCATCCTAGTGCACCTCCATCAGTTACTGGAGGGGGAAGTGAACCAGCTGCAATTCCTGCAGGAAATCCATCTGCTCCTCTTATATTTGATGGAACACAGCAATCATCACCACAGCAGAGGCCCCTAGTACAAACTCGGAGTTCTTCTTTTACTTCTGCCTCTACGGTCCCAACAACAAATCTTCAACGAGCTCACTCCAATGGAAGCTTTGCCTCTCATTCCTTGCCTGCAAGCCATGATGAACCACAGCCATCAGAACAATCATTCTCAGATTCTCTCCTTTCCAAATTTAATGCAGTATCCATGAGATACAAAGAATCAATTTCAAAGGGCACAAGGGGATGGAAGGAGAGGCTGTTCTCTCCTAATTCTTCTGTGTCAGAACTTGGTTCTGAAGTTAGGAGAGAACTGAATGCCAAAATTGCTAGTGTGTCCCGATTGATTGAGCGCCTTGAAACTGCAAGAGAAAATAAGAACGCTGCAGGCACTTCTGTATCAAATCATTCCGTTGCAGAGACCAGCAACAACCAAAACAATGTGGAAGTTCATGGAGAGAACTCTTTTCCTGGCAGTAATTCTTCTGCTACTTTTTCTGCCGTCCCAGATTCAAAGTGA 1122 0.4581 MEVPEMGGKTESRLTSAAAFVEGGIQDACDDSCSICLENFSKSDPATVTNCRHDFHLQCILEWCQRSSQCPMCWQAISLKDATSQELLEAVEQERSLRNMPSRNASIFHLSQHEFQRLPVERDSDIEERILRHLAAAASMRRAHPLGRRESQRSRSSSLGNVHSFVYATHPSAPPSVTGGGSEPAAIPAGNPSAPLIFDGTQQSSPQQRPLVQTRSSSFTSASTVPTTNLQRAHSNGSFASHSLPASHDEPQPSEQSFSDSLLSKFNAVSMRYKESISKGTRGWKERLFSPNSSVSELGSEVRRELNAKIASVSRLIERLETARENKNAAGTSVSNHSVAETSNNQNNVEVHGENSFPGSNSSATFSAVPDSK 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00228 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 83 IPR013083 -
Viun7g00228 373 ProSiteProfiles Zinc finger RING-type profile. 33 73 IPR001841 -
Viun7g00228 373 MobiDBLite consensus disorder prediction 196 260 - -
Viun7g00228 373 FunFam E3 ubiquitin-protein ligase RHF2A isoform X1 11 83 - -
Viun7g00228 373 SMART ring_2 33 73 IPR001841 -
Viun7g00228 373 SUPERFAMILY RING/U-box 26 80 - -
Viun7g00228 373 Coils Coil 303 330 - -
Viun7g00228 373 MobiDBLite consensus disorder prediction 170 260 - -
Viun7g00228 373 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 22 81 - -
Viun7g00228 373 MobiDBLite consensus disorder prediction 139 158 - -
Viun7g00228 373 MobiDBLite consensus disorder prediction 326 373 - -
Viun7g00228 373 Pfam Ring finger domain 31 73 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00228 Viun-Chr7 1599685 1603609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00228 30 81 C3H Transcription Factor Family AT4G00335 42.308 5.36e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00228 K19043 - gmx:100803582 537.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g00228 7 1599685 1603609 Viun7g00228 7 1599685 1603609 ECH
Viun1g02635 1 36304472 36309910 Viun7g00228 7 1599685 1603609 PCT