Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00208 ATGGATTCCAAGAACATGGCAAAGAAGACCCTGAAGAAGACGAAGGGTCGTCAGAAGATTGAGATAAAAAAGATGAGCAACGAGCATAACCTTCGGGTGACGTTCTCGAAGCGTCGCACCGGGATTTTCAAGAAAGCGAGCGAGCTTGCAACGCTGTGTGGCGTGGACATTGCTGTCATCATGTTTTCTCCGAGCAACCAGGTTTTCTCGTTCGGAAGCCCTAACGTGGACCCTGTTATCCAGCGCTACATGGCGCAGGGTCCACCTCCGCTTCTGACGCTGGACCTGAACGAGGCTCACAGCACCGTGGACGAGGGAGAACTCCATGCGCAACTCAACAACCTCTCCGACCAGATGGCGGCGGAGAAGAAACACGAAGAGGGTCTGAAACGTGTGATGAAGGACGTGGAAGAACACTCGTGGTGGGCCATGCCGATGGATTGCATGAACGATGCGCAGCTTGAGAAGTACAAGAAGATGTTGGAGGATCTGAAGGAACGCGTGAATGAAAAACGCGAGAAGCTCCTTCTGCAGACCACTTTTGCTTACAACTCACCCTCTCAGTTTCTCTCAGCTGGAAGCAACAACTCCTTTTCTTCCAGTGTTGATAACAACTCTGAAACTATACATCCGCCATTGTCGTTGTAG 648 0.5123 MDSKNMAKKTLKKTKGRQKIEIKKMSNEHNLRVTFSKRRTGIFKKASELATLCGVDIAVIMFSPSNQVFSFGSPNVDPVIQRYMAQGPPPLLTLDLNEAHSTVDEGELHAQLNNLSDQMAAEKKHEEGLKRVMKDVEEHSWWAMPMDCMNDAQLEKYKKMLEDLKERVNEKREKLLLQTTFAYNSPSQFLSAGSNNSFSSSVDNNSETIHPPLSL 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00208 215 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 24 71 IPR002100 GO:0003677|GO:0046983
Viun7g00208 215 ProSiteProfiles MADS-box domain profile. 15 75 IPR002100 GO:0003677|GO:0046983
Viun7g00208 215 FunFam Agamous-like MADS-box protein AGL62 27 91 - -
Viun7g00208 215 MobiDBLite consensus disorder prediction 196 215 - -
Viun7g00208 215 Gene3D - 27 89 IPR036879 GO:0003677|GO:0046983
Viun7g00208 215 SMART madsneu2 15 74 IPR002100 GO:0003677|GO:0046983
Viun7g00208 215 PRINTS MADS domain signature 37 52 IPR002100 GO:0003677|GO:0046983
Viun7g00208 215 PRINTS MADS domain signature 17 37 IPR002100 GO:0003677|GO:0046983
Viun7g00208 215 PRINTS MADS domain signature 52 73 IPR002100 GO:0003677|GO:0046983
Viun7g00208 215 CDD MADS_MEF2_like 16 84 IPR033896 GO:0000977|GO:0045944
Viun7g00208 215 SUPERFAMILY SRF-like 16 92 IPR036879 GO:0003677|GO:0046983
Viun7g00208 215 Coils Coil 154 178 - -
Viun7g00208 215 PANTHER MADS BOX PROTEIN 17 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00208 Viun-Chr7 1497822 1498816 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00208 11 215 Type I MADS-box Gene Family AT5G60440 41.148 4.43e-44 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Viun7g00208 SRF-TF 6.8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00208 - - ccaj:109815930 241.121