LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun7g00207	ATGAACAACAACACAAGTGATTCATCTGGGTACCTTGGATCCAGCAACATAAGTGGGTTTGGCATGGGCATAGGAATCTCAATTGGGATTCTTCTGCTGATCACAACCATCACACTCACCTCCTACTTCTGCACCAGGTCACAGGTGCCAGCTGCTCCAAGGAGAAGAACTTCTTCTTCAACTGGCCCACAATTCCTTGAGCCACACCACACAATAGTTGATGTTGGGTTGGATGAAGCCACAATCATGAACTACCCCAAGATGCTGTTCTCTGAAGCCAAGCTGAGAAAATCTGATTCCACACCAACAAGCTGTTCCATATGTCTGGGAGATTACAAAAGTTCTGATGTGCTAAGGGTTTTGCCAGATTGTGAACATGTGTTTCACCTCAACTGCATAGACCCATGGTTAAGGCTGCATCCAACTTGTCCTCTCTGCAGAACATCACCTATCCCAACACCTCTCTCCACACCTCTTGCAGAAGTTGTCCCATTAGCAACAAGGCGAGATTGA	513	0.4659	MNNNTSDSSGYLGSSNISGFGMGIGISIGILLLITTITLTSYFCTRSQVPAAPRRRTSSSTGPQFLEPHHTIVDVGLDEATIMNYPKMLFSEAKLRKSDSTPTSCSICLGDYKSSDVLRVLPDCEHVFHLNCIDPWLRLHPTCPLCRTSPIPTPLSTPLAEVVPLATRRD	170

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun7g00207	170	Pfam	Ring finger domain	104	147	IPR001841	-
	Viun7g00207	170	CDD	RING-H2_EL5-like	104	147	-	-
	Viun7g00207	170	PANTHER	TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED	1	161	IPR045899	-
	Viun7g00207	170	SMART	ring_2	105	146	IPR001841	-
	Viun7g00207	170	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	66	151	IPR013083	-
	Viun7g00207	170	ProSiteProfiles	Zinc finger RING-type profile.	105	147	IPR001841	-
	Viun7g00207	170	FunFam	E3 ubiquitin-protein ligase ATL6	67	152	-	-
	Viun7g00207	170	SUPERFAMILY	RING/U-box	82	152	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun7g00207	Viun-Chr7	1493780	1494901	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun7g00207	7	167	C3H Transcription Factor Family	AT2G35910	61.111	8.52e-55	171

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun7g00207	-		-	gmx:100796149	266.159

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Viun1g02614	1	36236880	36237986	Viun7g00207	7	1493780	1494901	PCT