Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00205 ATGGCGATGCAGACTGCTTACCTGAAAGAACACGAAGGAATTGTTCACAATTCTGTCGGACAGTTGTCATCATCTGCTACTTCAGCTCCATGGTGGAATGGCTCAGGATCTCAACCAGTTTATGGAGATTATTGTGCCCAGAACAAGCCCTTTTCGTTGGAGTTTTCGAACTACGTCGACCCATATGCTGCTGGTAAGCAAGTAGTTCGAGGAGCTGAGCCAGTGATCGATAGAGGACATGCAACCCAGTTTTCCATCTTTCCAGATGAATGTAAAATGTTAGGCGAAGCTCAAAGTTCTCAGGCAAACTTGGCACTGCAGCCACCACTTGCTGAGCCCACCAACAATTTCGACATAGGGTTTAATCAACAACCTATGATGTGTGCACCATATCCCTGCACGGATCAATATTGTGGGCTCGTCTCAGCTTATGCACCTCAAATTTCGGGACGTATAATGCTTCCGCATAACATGGCCTCTGATGATGCACCAACCTACGTGAATGCTAAGCAGTACCATGGAATCATCAGACGCAGGCAGTCACGTGCCAAGGCTGTTCTTGAGAACAAATTCATCAAACGTCGCAAGCCCTACATGCATGAATCTCGCCATCTGCATGCAATGAGGCGACCAAGAGGAAATGGTGGTCGGTTCTTGAACACAAGAAACTCCAACAATGGAAATAATGGTGGAAATGATGCTGATAATGAAGCGAATAAAATGGGTGGTCTACAATTTCTGTCCAGTGCCTCTCAGAGCTCTGAAATGCTGCAATCTGATGTTGGAATAAACTCACCTATGGAGACAGATGATTGCAGTCCAAACATGTCTAGCTCAGAAGTGAATAGCATGTATTCGAGGGAAGGTTTCGAGGGGTTTCCTGTGAATGCTCTTGGAGCTTCTGTGTATCCTCTGGGATCTTCTGTGCGTTCGATAAAGAACATGATAGGTAGTGGAAATGGTGTTAGCATGCCCAATAGATGGGCTTAA 990 0.4586 MAMQTAYLKEHEGIVHNSVGQLSSSATSAPWWNGSGSQPVYGDYCAQNKPFSLEFSNYVDPYAAGKQVVRGAEPVIDRGHATQFSIFPDECKMLGEAQSSQANLALQPPLAEPTNNFDIGFNQQPMMCAPYPCTDQYCGLVSAYAPQISGRIMLPHNMASDDAPTYVNAKQYHGIIRRRQSRAKAVLENKFIKRRKPYMHESRHLHAMRRPRGNGGRFLNTRNSNNGNNGGNDADNEANKMGGLQFLSSASQSSEMLQSDVGINSPMETDDCSPNMSSSEVNSMYSREGFEGFPVNALGASVYPLGSSVRSIKNMIGSGNGVSMPNRWA 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00205 329 PRINTS CCAAT-binding transcription factor subunit B signature 164 186 IPR001289 GO:0003700|GO:0006355
Viun7g00205 329 PRINTS CCAAT-binding transcription factor subunit B signature 195 218 IPR001289 GO:0003700|GO:0006355
Viun7g00205 329 MobiDBLite consensus disorder prediction 217 235 - -
Viun7g00205 329 MobiDBLite consensus disorder prediction 209 238 - -
Viun7g00205 329 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 97 285 IPR001289 GO:0003700|GO:0006355
Viun7g00205 329 SMART cbf3 160 221 IPR001289 GO:0003700|GO:0006355
Viun7g00205 329 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 164 218 IPR001289 GO:0003700|GO:0006355
Viun7g00205 329 Gene3D - 162 222 - -
Viun7g00205 329 ProSiteProfiles NF-YA/HAP2 family profile. 161 221 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00205 Viun-Chr7 1469656 1473697 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00205 1 304 CCAAT-HAP2 Transcription Factor Family AT3G05690 38.272 5.16e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Viun7g00205 CBFB_NFYA 2.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00205 K08064 - gmx:100808195 411.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02611 1 36203993 36207716 Viun7g00205 7 1469656 1473697 PCT