Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00192 ATGGTTCCTTATTTTTTCCAAACCAGAAACATTCAGAGAAACATTCATGCTGTAAATTTGTTTTCCATGGCTGCTTCTTCCCTAATCTTCAACAGTTCACTCTCCTTTAACTTCTCACACACGGTCATATCCTTCAAACCTCAAAACCTCAAGCCACAATTTCCCTTTTCTTCTGCGATCTCACTTTACCATCTTCCCCTGTCTTTGGTTTCCTTCCAAGACGCTCAAAACCCACTACAGCATGAAACCCTGCAAAAATCAGAGCCAAATGCCTCACGCTTAAACCATTCAGCGAGACTCTTTGTGGGAAACTTGCCTTATTCGTTGCCCTCTTCTCAGTTAGCTCAGCGGTTTGAAGAGGCTGGCAATGTTGTATCCTCTGAGATTGTGTATGATGACATTACGGATAGAAGTAGAGGGTTTGCGTTTGTTACAATGGGGAGCGTGGAGGAAGCTGAATGTGCAACTCGAATGTTTGATGGCTCTGAAATTGGAGGTAGGATTATTAAGGTAAACTTCACAGAAATACCCAGAAAAGGAAAATGGAGAGTAATGGGTTCAAACTACAGAGGCTTTGTAGACAGCCCTCACAAGATTTATGCTGGAAACCTTGGTTGGGGTGTGACTTCACAGTGTCTTAGAGATGCCTTTGTTGAGCAGCCAGGCTTCCTGAGTGCCAAAGTCATCTATGAAAGGAACAGTGGGAAGTCTCAGGGATACGGGTTTGTCTCTTTTGAAACTGCTGAGGATGTAGAGGCTGCTTTGAATTCTATGAATGGAGTGGAAGTTCAAGGCAGGCCCTTACGTCTGAATCTAGCTGCAGGATGA 828 0.4396 MVPYFFQTRNIQRNIHAVNLFSMAASSLIFNSSLSFNFSHTVISFKPQNLKPQFPFSSAISLYHLPLSLVSFQDAQNPLQHETLQKSEPNASRLNHSARLFVGNLPYSLPSSQLAQRFEEAGNVVSSEIVYDDITDRSRGFAFVTMGSVEEAECATRMFDGSEIGGRIIKVNFTEIPRKGKWRVMGSNYRGFVDSPHKIYAGNLGWGVTSQCLRDAFVEQPGFLSAKVIYERNSGKSQGYGFVSFETAEDVEAALNSMNGVEVQGRPLRLNLAAG 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00192 275 Gene3D - 71 182 IPR012677 -
Viun7g00192 275 Gene3D - 186 275 IPR012677 -
Viun7g00192 275 SUPERFAMILY RNA-binding domain, RBD 90 175 IPR035979 GO:0003676
Viun7g00192 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 98 176 IPR000504 GO:0003723
Viun7g00192 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 100 170 IPR000504 GO:0003723
Viun7g00192 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 199 269 IPR000504 GO:0003723
Viun7g00192 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 197 275 IPR000504 GO:0003723
Viun7g00192 275 SMART rrm1_1 198 271 IPR000504 GO:0003723
Viun7g00192 275 SMART rrm1_1 99 172 IPR000504 GO:0003723
Viun7g00192 275 SUPERFAMILY RNA-binding domain, RBD 194 273 IPR035979 GO:0003676
Viun7g00192 275 FunFam 33 kDa ribonucleoprotein, chloroplastic 180 275 - -
Viun7g00192 275 PANTHER OS02G0815200 PROTEIN 76 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00192 Viun-Chr7 1420568 1423521 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00192 78 273 Eukaryotic Initiation Factors Gene Family AT1G49760 30.392 1.09e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00192 - - vra:106769956 444.506