Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00188 ATGAACGACTTGTTCTCGGGCTCCTTCACCCGCAACGGCGACCAAGCCTCGCCGGACCACCACCACCACCACGTGGTCGAGATGGCGGCGGTGGAGGGCGGCGTGAACCTGGAGAAGTTCTTTGAGGAAGTTGAGCCGGTAAAAGCAGAGTTGAAAGAGCTAGAGCGTCTCCATGAGAACTTGCGCGGTTCCCACGAAAAAAGCAAGACACTTCACAGTGCTAACGCTGTGAAAGAGCTTCGCTCGCGCATGGACGCTGACGTATCACTGGCTTTAAAGAAAGCCAAGCTCATCAAGGTCCGGCTCGAAGCGCTGGACAAGTCCAACCAGACAAACCGAAACCTGCCCGGTTCTGGACCGGGTTCTTCCTCGGACCGAACCAGAACATCTGTGGTGAACGGATTGAGGAAGAATCTGAAAGACTCCATGGACAACTTCAATAACCTTAGACAACTGATATCGACGGAGTACAGAGAAACCGTGCAGCGGAGGTATTATACTGTTACCGGAGAGAACCCCGATGACAAAACCATCGACCTTCTCATTTCTACAGGTGAGAGTGAAACATTTTTGCAGAAAGCGATTCAGCAGCAAGGTAGAGCGAGCGTGATGGAGACGATTCAAGAGATTCAAGAGAGGCACGACACGGTGAAAGAGATAGAGCGAAACCTGAAGGAGCTGCACCAGGTGTTCCTAGACATGGCTGTGTTGGTGCAGTCCCAGGGAGAGCAATTGGACGACATAGAGAGCCATGTAGCACGTGCCAACTCGTACGTGAGAGGTGGGGTCCAGCAACTCCAAGTAGCAAGGAAGCACCAGAAAAACACCCGAAAGTGGACCTGCTACGCCATCATTCTGCTCATTATTATCATCTTGATCATAGTTCTCCCCATAGTTTTAAGAAATTGA 909 0.5138 MNDLFSGSFTRNGDQASPDHHHHHVVEMAAVEGGVNLEKFFEEVEPVKAELKELERLHENLRGSHEKSKTLHSANAVKELRSRMDADVSLALKKAKLIKVRLEALDKSNQTNRNLPGSGPGSSSDRTRTSVVNGLRKNLKDSMDNFNNLRQLISTEYRETVQRRYYTVTGENPDDKTIDLLISTGESETFLQKAIQQQGRASVMETIQEIQERHDTVKEIERNLKELHQVFLDMAVLVQSQGEQLDDIESHVARANSYVRGGVQQLQVARKHQKNTRKWTCYAIILLIIIILIIVLPIVLRN 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00188 302 ProSitePatterns Syntaxin / epimorphin family signature. 213 252 IPR006012 GO:0005484|GO:0006886|GO:0016020
Viun7g00188 302 Pfam SNARE domain 243 295 IPR000727 -
Viun7g00188 302 SMART SynN_4 32 158 IPR006011 GO:0016020
Viun7g00188 302 Coils Coil 37 57 - -
Viun7g00188 302 CDD SNARE_syntaxin1-like 206 267 - -
Viun7g00188 302 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 34 164 - -
Viun7g00188 302 Gene3D - 35 167 - -
Viun7g00188 302 Coils Coil 132 152 - -
Viun7g00188 302 PANTHER SYNTAXIN 53 292 IPR045242 -
Viun7g00188 302 SMART tSNARE_6 202 269 IPR000727 -
Viun7g00188 302 FunFam Syntaxin 132 200 300 - -
Viun7g00188 302 SUPERFAMILY t-snare proteins 35 262 IPR010989 GO:0016020|GO:0016192
Viun7g00188 302 MobiDBLite consensus disorder prediction 1 21 - -
Viun7g00188 302 CDD SynN 37 194 IPR006011 GO:0016020
Viun7g00188 302 MobiDBLite consensus disorder prediction 109 129 - -
Viun7g00188 302 Pfam Syntaxin 39 242 IPR006011 GO:0016020
Viun7g00188 302 Gene3D - 195 300 - -
Viun7g00188 302 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 207 269 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00188 Viun-Chr7 1417469 1419036 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00188 29 281 SNARE and Associated Proteins AT3G11820 74.704 1.89e-141 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00188 K08486 - gmx:100808718 481.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g00188 7 1417469 1419036 Viun7g00188 7 1417469 1419036 ECH
Viun1g02607 1 36191842 36193330 Viun7g00188 7 1417469 1419036 PCT