Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00180 ATGTGTCTGCGACCACAGTACAACCTTAGTAGTAACATCAAGGTTTTTGTGACGATGGAGAGTGGATTGAAGGGTGAGGTTGAGATATCACCAAATTGTCCAAGGTGTGGTTCTTCCAACACCAAGTTCTGCTACTACAATAACTACAGCTTAACTCAACCGAGGTACTTTTGCAAAGGTTGCAGAAGATACTGGACCAAAGGAGGGTCTCTGCGGAATGTTCCTGTTGGTGGTGGCTGCAGGAAGAACAGAAGAGGTAACAAGAATTTGTTGAGACAATCCATTGATGGTTTCACTTTCAAAACTTCATCATCACCACCACCTTCTGCCAATGCCACAGATCATAATAACAACAACAACAACCCTGTTGAGCATTCTTATGATCCCAGAATAAGAACTTCTGCAGCTTCTGGTTCCTCCTCAGTGCTCAGTGATGGTCCAAATATTGATCTTGCACTGGTTTATGCAAATTTCCTCAACCAAAAACCCAGCTCTGAATCTGGGATTGAGAGCAGGAGTAACCCAGATCAAGTTCCAACAGCTTTTGATCCTTCTCTTGAGAATAATTCAAGGCTATCAAACACAGATGTTACTGGGTGTTTGAATCTTCCAGAACAACCATCCACACATTCTGCTGAGGCTAATAATTGTGGCCAAATATGCTATGGTGAGTTCAACACTATGCAGACTATTCAAAAACAAGGGATTGAGCAGTGTAGTAGTCATGGTGGTGCTGTGAATTTTGAGCTGCCACCATTACCGGGTGAAGTGGAAGCCTCACATGATCATCATCATCATCATCATATGATGTGGTCAAATTCTGAGATGATGACATTTGAAGCCACGCAACCAGTTCTTGGACCTGAAGTTCATGATGCAGACTTGTTAATAGGTAATTGGAGCCCCTTTGATTTGCCTTGA 921 0.4278 MCLRPQYNLSSNIKVFVTMESGLKGEVEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGNKNLLRQSIDGFTFKTSSSPPPSANATDHNNNNNNPVEHSYDPRIRTSAASGSSSVLSDGPNIDLALVYANFLNQKPSSESGIESRSNPDQVPTAFDPSLENNSRLSNTDVTGCLNLPEQPSTHSAEANNCGQICYGEFNTMQTIQKQGIEQCSSHGGAVNFELPPLPGEVEASHDHHHHHHMMWSNSEMMTFEATQPVLGPEVHDADLLIGNWSPFDLP 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00180 306 ProSitePatterns Zinc finger Dof-type signature. 33 69 IPR003851 GO:0003677|GO:0006355
Viun7g00180 306 ProSiteProfiles Zinc finger Dof-type profile. 31 85 IPR003851 GO:0003677|GO:0006355
Viun7g00180 306 MobiDBLite consensus disorder prediction 163 193 - -
Viun7g00180 306 MobiDBLite consensus disorder prediction 98 128 - -
Viun7g00180 306 Pfam Dof domain, zinc finger 32 85 IPR003851 GO:0003677|GO:0006355
Viun7g00180 306 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 29 210 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00180 Viun-Chr7 1368214 1369403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00180 27 305 C2C2-Dof Transcription Factor Family AT3G52440 38.567 5.64e-49 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Viun7g00180 zf-Dof 4.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00180 - - gmx:100794208 418.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g00180 7 1368214 1369403 Viun7g00180 7 1368214 1369403 ECH
Viun1g02604 1 36142634 36143554 Viun7g00180 7 1368214 1369403 PCT