Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00178 ATGGAGGAAATTGAAGTGCCTCAATACTTCATCTGCCCCATATCCCTTCAAATCATGAGGGACCCCGTTACGGCCATAACGGGCATCACTTACGATCGAGAAAGCATTGAACAATGGCTATTCAATAACAAGAACACCACATGCCCCGTCTCCAAACAACTCCTCCCAACAGACTCTGACCTAACCCCTAACCACACCCTTCGACGCTTGATCCAAGCCTGGTGCACCCAAAACGCTTCACTTGGCATCGTTCGCATTCCAACTCCTAAACCTCCTCTCAACACAGTTCAAGTTCTTAAACTCCTCAAACATCTCCATCATCACAAAACCTTCGTGCAGTTGGAGCTTCTTGCCGTGGAGAACGAGAGAAATAAAAAGTGCTTGCTTGAAGCAGGGGTCCCAAAGGCCATGATCATCTTCATCATCAATTCTTATAGAAATGCTCAAATCCAAAAGGGTCTCCAAGAAGCTCTTAGCATATTGCAGTTTGTCAAGATCCCCAAGAAGGAATGGCCGCTGCTCGTGAAGGAGCACGACGAGATATTGGATTCTCTAACATGGATTCTATGTCGTGAGGGAATGGAGAACTCGATTGCAGTGAAATCCCATGCGGTTCTTCTCCTGAAGAAGATGATCAACATGGGCGACACGTGTCACGTTCTGGAGAGACTGAAACCCGAATTCTTCGAAACAATGGTGAGGGTTATGAGACACGGAGTGACCCAACAAGGAACGAGTGCGGCACTTCACGTTCTGTTAAGCGCTTCTTCTTCGACGCGGAACAGGATGATGATGGTGGAAGCAGGTGTGGTTCACGAAGTGGTGGAGATCGAACTGGGGGCGCCGGAGAAGAGAGTGACGGAACTAACGCTGGCTATATTGTTCAACTTGTGTTGTTGCGCCAACGGGAGAGCCAAGTTTTTAAGCCACGAAGGGGCGATCGCGGTGGTGACGGAGAGGATACTGAAGGTGTCTGCGGCGGTGGACGACAGGGCGGTGTTTGTTTTGGCGATGGTGGCTAAGTTTTCGGGGACGAAGGTGGTTTTGCAGGAGATGTTGAAGGTGGGAAGCTTTGCGAAGCTTTTCATGGTGCTTCAGGCTGATAGGGCAAAGTATTTGAAGGACAAAGCCATGGAGATTCTGAAGGAACACTCTGAGGTTTGGAGCGACTCGCCTTGCTTTCCTCGTTCGTCGTTTTGTGCGTAA 1206 0.4934 MEEIEVPQYFICPISLQIMRDPVTAITGITYDRESIEQWLFNNKNTTCPVSKQLLPTDSDLTPNHTLRRLIQAWCTQNASLGIVRIPTPKPPLNTVQVLKLLKHLHHHKTFVQLELLAVENERNKKCLLEAGVPKAMIIFIINSYRNAQIQKGLQEALSILQFVKIPKKEWPLLVKEHDEILDSLTWILCREGMENSIAVKSHAVLLLKKMINMGDTCHVLERLKPEFFETMVRVMRHGVTQQGTSAALHVLLSASSSTRNRMMMVEAGVVHEVVEIELGAPEKRVTELTLAILFNLCCCANGRAKFLSHEGAIAVVTERILKVSAAVDDRAVFVLAMVAKFSGTKVVLQEMLKVGSFAKLFMVLQADRAKYLKDKAMEILKEHSEVWSDSPCFPRSSFCA 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00178 401 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Viun7g00178 401 CDD RING-Ubox_PUB 7 61 IPR045210 -
Viun7g00178 401 Gene3D - 96 390 IPR011989 -
Viun7g00178 401 PANTHER WDSAM1 PROTEIN 2 395 IPR045185 GO:0061630
Viun7g00178 401 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Viun7g00178 401 SUPERFAMILY ARM repeat 114 371 IPR016024 -
Viun7g00178 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Viun7g00178 401 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Viun7g00178 401 SUPERFAMILY RING/U-box 3 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00178 Viun-Chr7 1337819 1339643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00178 2 394 U-box Gene Family AT3G11840 41.723 7.41e-113 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00178 - - gmx:100798446 607.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g00178 7 1337819 1339643 Viun7g00178 7 1337819 1339643 ECH
Viun1g02603 1 36132745 36134382 Viun7g00178 7 1337819 1339643 PCT