Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00177 ATGGCGACATATTTTCAAAGTAACCCCAAAATTCAAGCAGGTGCTGACGGCCTTCAGACTCTCGTACTAATGAACCCTGACTATGTCCAATACTCCGACGCGCCGCCGCCACCCCACGGCGGAAACCACTTGTTTCTCAACTCCGCCGCCACCGTTGCCAACAACACCTCCCTACTGAATCTCCCCCACGCGCCGTCCCCTCACACTCAGCAATTCGTCGGGGTGCCGCTCTCCGCCGCAGCTCAGGAGCCGCCGCCGTCCATGCCCCACGACGTCTCCGCCCTGCATGGCTTCCTGCCCCGCATGCAGTACAACCTTTGGAACACAATTGACCCCAACACGGCGGCGCGTGAGGCCCCACGCGCTTCACAGGGACTCTCACTTAGCCTTCACGGTGAGGAGGTGCGCCCATCGTCCTCCTCCGCTTCCGGGGCCTCCAACGGCGGCGGTGTGGCCGGGATTCAGAGTGTTCTCTTGAGTTCCAAGTACTTGAGGGCCACGCAAGAACTTCTTGACGAGGTTGTGAATGTTAACAGCGGAATTAAGGTGGAACAAGGGAAGAAGAGCTTCGAGAAAACTAAGGTGGTTGGAGAATCATCAACCGCCGCTAGTGGTGACGGCGGAGAGGGTAGTGGGAAACGTAGCTCTGAACTGTCTACTACAGAGAGACAAGAAATTCAGATGAAGAAAGCAAAGCTAATCAACATGCTTGACGAGGTGGAGCAAAGGTACAGGCAGTACCACAACCAGATGCAGATTGTGACATCCTCGTTCGAGCAAGTTGCAGGGATTGGTTCTGCGAGGACGTACACAGCACTTGCATTGCAAACAATTTCAAAGCAATTTCGATGTTTGAAGGATGCTATAACAGGTCAAATCAGAGCTGCAAATAAGAGTTTGGGAGAAGAGGATTGTTTCGGGGCTAAAGTCGAAGGTTCTAGGCTCAAATACGTGGATCACCATCTACGGCAACAGAGAGCTATTCAACAGTTGGGAATGATCCATCACAATGCTTGGAGACCCCAGAGAGGATTGCCAGAGAGATCGGTTTCTGTCTTACGTGCTTGGCTCTTTGAACACTTTCTCCACCCCTACCCCAAGGACTCCGACAAACACATGCTTGCAAAACAAACAGGGCTTACCAGGAGCCAGGTTTCAAATTGGTTCATAAATGCTCGAGTTCGGCTTTGGAAGCCAATGGTGGAGGAAATGTACTTGGAGGAGATGAAAGAGCACGAAGTAAACGGAAATGGGTCTGAGGAGAAATCAAGCAAGAGTGGTGAAGATCCTGCGATGAAGGGAGAGAAACGTCCTACCTCTGAGATTGAATCAAAAGGTTCTAGTTCTAAACAAGAGAACAATTCAACAGTTTCAACTTCACCATCAACATCACCACCCGTAGTGGGTAGTGTCAAGAATCAATCAGGATTCAGTTTCATGGGGTCATCAGAGTTAGATGGAATCACACAAGGAAGCCCGAAGAAAGCAAGGAACCATGAAATTCTAGTCTCTCCAAATCGTGCTTCTTCGACGAACAATGAGCAACAGGTTTCAATGGATGAGAGACAGAGCAGGGATGGGTACTCATTCATGGGGAGCCAAACGAACTTCACAAGTGGGTTTGGACAATACCCAATGGAGGAAATTGGTAGGTTTGATGCAGAACAATTCACACCAAGGTTTTCAGGTAATGGTGTTTCCCTCACTCTTGGTCTTCCTCACTGTGACACATTGTCAGGAACACATCAAAATTTTCTCCCAAACCAGAACATTCAGCTTGGAAGAGGGTTGGACATTGGTCAACCAAATCAGTTTGGTGTGTTGAACAATTCCACTTCTCACTCTTCAGCAGCATTTGAGAGTATGAACATGCAGAACCCAAAGAGGTTTGCAGCACAATTGGTACTGGACTTTGTGGCATAA 1923 0.4945 MATYFQSNPKIQAGADGLQTLVLMNPDYVQYSDAPPPPHGGNHLFLNSAATVANNTSLLNLPHAPSPHTQQFVGVPLSAAAQEPPPSMPHDVSALHGFLPRMQYNLWNTIDPNTAAREAPRASQGLSLSLHGEEVRPSSSSASGASNGGGVAGIQSVLLSSKYLRATQELLDEVVNVNSGIKVEQGKKSFEKTKVVGESSTAASGDGGEGSGKRSSELSTTERQEIQMKKAKLINMLDEVEQRYRQYHNQMQIVTSSFEQVAGIGSARTYTALALQTISKQFRCLKDAITGQIRAANKSLGEEDCFGAKVEGSRLKYVDHHLRQQRAIQQLGMIHHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEMKEHEVNGNGSEEKSSKSGEDPAMKGEKRPTSEIESKGSSSKQENNSTVSTSPSTSPPVVGSVKNQSGFSFMGSSELDGITQGSPKKARNHEILVSPNRASSTNNEQQVSMDERQSRDGYSFMGSQTNFTSGFGQYPMEEIGRFDAEQFTPRFSGNGVSLTLGLPHCDTLSGTHQNFLPNQNIQLGRGLDIGQPNQFGVLNNSTSHSSAAFESMNMQNPKRFAAQLVLDFVA 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00177 640 Gene3D - 342 419 - -
Viun7g00177 640 MobiDBLite consensus disorder prediction 188 223 - -
Viun7g00177 640 Pfam Associated with HOX 157 290 IPR006563 -
Viun7g00177 640 CDD homeodomain 339 400 IPR001356 GO:0003677
Viun7g00177 640 MobiDBLite consensus disorder prediction 444 475 - -
Viun7g00177 640 Pfam Homeobox KN domain 356 395 IPR008422 GO:0003677|GO:0006355
Viun7g00177 640 ProSiteProfiles 'Homeobox' domain profile. 336 399 IPR001356 GO:0003677
Viun7g00177 640 SUPERFAMILY Homeodomain-like 340 406 IPR009057 -
Viun7g00177 640 MobiDBLite consensus disorder prediction 133 149 - -
Viun7g00177 640 MobiDBLite consensus disorder prediction 411 443 - -
Viun7g00177 640 MobiDBLite consensus disorder prediction 411 475 - -
Viun7g00177 640 Coils Coil 223 250 - -
Viun7g00177 640 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 84 428 - -
Viun7g00177 640 FunFam BEL1-like homeodomain protein 9 342 404 - -
Viun7g00177 640 SMART prehox3 152 291 IPR006563 -
Viun7g00177 640 MobiDBLite consensus disorder prediction 129 149 - -
Viun7g00177 640 SMART HOX_1 339 403 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00177 Viun-Chr7 1327166 1330753 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00177 1 640 Homeobox Transcription Factor Family AT2G35940 50.139 8.34e-178 519
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Viun7g00177 POX 1.6e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00177 - - gmx:100810851 1057.36