Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00173 ATGGCAATGGCTCTGTCATACTCTTTGCCGTTGCTTCTTTTCTCTCTGTGGACGGTGGTGTTAACCGAAACGGACCCGAACGATGTGGGGATTCTGAACAGTTTTCGAAGTGGTCTGAAGAACAAAGAGCTCTTACCGTGGCCGGAAGAAGGAGGAGACCCGTGTGGGAATCCGCCATGGAAGTACATCTTCTGCAATGGCAACAGAGTTTCTCAGATTCAGACCAAGGACTTGGGTCTGGTGGGCCCGCTACCCTCCGACTTCAACAAGCTTTCCATGTTGGAGAATCTGGGTCTGCAGAACAACAACCTCACCGGGCCCCTACCCTCCTTCAATGGCTTGTCAAACTTGAAGTACGCATTTCTCAACCGCAATGGGTTTGAATCCATTCCCGGAGATTTTTTCCGGGGGCTTCGAAGTCTGCAGGTGTTGGCTTTGGATTACAATAATCTCAATGCCTCTTCTGGTGGCTGGGTGCTTCCTCAAACTTTGGAAGATTCGGCGCAGTTGAGGAACTTTTCTTGCATGAGCTGCAACTTGGTGGGTCCCATTCCTGCGTTTCTCGGCTCTTTGGCGTCGCTGGAGGTGCTGCAGCTCTCCGGGAACAGCTTGACCGGGGAGATTCCGGCGGCGCTGAACGCCGTTCCGGCGTTGCAGATTCTCTGGCTGAACAACCAGCGTGGCGACGGACTTACAGGGAAAATTGAAGTTGTTGCGAGCATGATTTCGTTGACGAGTTTGTGGCTTCACGGGAATAAGTTTAGCGGGAGTATTCCGATGAACATTGGGGATTTGGTCTCGCTGAGGGATTTGGATCTTAATGGGAATGAGTTTGTTGGGTTGATTCCGCGTGGTTTGAGTGGGATGAAGTTGGAGCGGTTGGATTTGAATAATAACCACTTCATGGGTCCGATCCCTGATTTTGCAGCGGATAAAGTGAGTTTTGAAAGCAATAATTTTTGCTTGTCGAAGCCTGGGGCTATGTGTGCGTTTGAGGTGATGGCGCTGTTGGATTTTCTTGGGGGGTTGGGTTACCCTCAGATTTTGGTTGATTCGTGGAGTGGCAATAATCCGTGTGATGGGCCATGGCTGGGGATAAAGTGCAATGGGGATGGAAAGGTGGAAATGATTATTCTGAATAACTTTAATCTTAGTGGTACTTTGAGTCCTTCTATTGCCAAGTTAGATTCTCTTGTTGGAATAAGATTGGGAGGTAACGATATCAGTGGTAGGATACCCAGTAATTGGACTAGTTTGAGATCATTGACGTTGTTGGATCTGAGTGGTAATAACATTTCCCTTCCCTTGCCGAGTTTCGCGAAAGGGGTGAAGCTTGTGATTGATGGGAATCCTCAGTTACATGGTGCCCCAGCACCAGGTTCTGTTTCTGGTTCTAGTCCTGGTTCTGGTTCTGGTGAGGTTGAACCTCCTTCATCTGATAAGCATAATCCTAATCCATCTAAAGACACTGGTCCCAATCCAAAGTCTGGCAGTGTCTCTCCTGAGTCAAATAATTCCAGAAGGAAAGGCTTGGTTACGATTGTGGCTCCTATCGCAGGTGTTGCTGCTGCGGCTTTTGTTCTCATTCCGCTTTCTGTGTATTGTTTCAGGAAGAGAAAGGGTGTCTCTGAGAAAGCAGGGTCTCTGGTGATTCACCCCAGAGAATCTTCTGATTCGAACAATTTGCTGAAGGTTGTAATTGCTAACGACGGCAATGGGAGTGTTTCCACAGTGACTGGCTCTGGGACTCTAAATGGAAGTGCGGATTCTCATGTCATTGAATCTGGGAACCTTGTGATATCGGTTCAGGTTCTTCGAAACGTGACCAAGAATTTTGCACGGGAGAATGAGCTTGGACGCGGTGGATTTGGAGTAGTTTACAAGGGAGAATTGGATGATGGAACTAAGATTGCGGTGAAACGAATGGAATCGGGTGTTATTACCAGCAAGGCCTTGGATGAGTTCCAGTCTGAGATTGCAGTTCTATCGAAAGTCAGACACCGGCATTTGGTATCTCTTTTGGGTTATTCGGTTGAAGGTAATGAGAGGATTCTGGTTTATGAGTACATGCCACAAGGGGCTCTCAGTATGCATCTGTTCCATTGGAAGAGCTCGCAACTGGAGCCACTCTCTTGGAAGAGGAGGCTCAATATTGCCTTGGATGTTGCTAGAGGAATGGAGTATCTTCATAGCCTGGCACACCAGATCTTCATTCACAGAGATCTTAAATCATCAAATATTTTGCTTGGGGATGACTTTAGAGCAAAAGTCTCAGATTTTGGATTGGTGAAACTTGCCCCTGATGGCAAAAAATCTGTAGTGACCAGGCTTGCTGGTACATTTGGATACTTGGCACCAGAATATGCAGTGACAGGAAAAGTCACCACCAAAGCAGATGTTTTCAGTTTCGGCGTTGTGCTAATGGAGCTGGTAACTGGATTAATGGCACTTGATGAGGATAGACCCGAGGAAAGCCAGTACTTGGCATCGTGGTTCTGGCATGTGAAATCAGACAAGGAGAAACTAATGGCTGCTGTCGACCCTGCCCTTGACATAAAGGAAGAAATGTTCGATATTGTCTCCATCGTTGCGGAGTTAGCTGGGCACTGCACTGCCAGAGAACCAAACCAAAGGCCAGATATGAGTCATGTTGTGAATGTTCTTGGACCGCTTGTTGAGAAATGGAAACCATTCGATGATGAGACTGAGGAGTATTCTGGCATCGACTATAGTCTTCCCCTCAACCAAATGGTGAAGGATTGGCAAGAGACAGAAGGGAAGGAATTGAGCTATGTGGATCTTCAAGACAGTAAGAGCAGTATCCCTGCAAGACCTACTGGGTTTGCAGAGTCTTTCACTTCTGTTGATGGCCGCTGA 2877 0.4745 MAMALSYSLPLLLFSLWTVVLTETDPNDVGILNSFRSGLKNKELLPWPEEGGDPCGNPPWKYIFCNGNRVSQIQTKDLGLVGPLPSDFNKLSMLENLGLQNNNLTGPLPSFNGLSNLKYAFLNRNGFESIPGDFFRGLRSLQVLALDYNNLNASSGGWVLPQTLEDSAQLRNFSCMSCNLVGPIPAFLGSLASLEVLQLSGNSLTGEIPAALNAVPALQILWLNNQRGDGLTGKIEVVASMISLTSLWLHGNKFSGSIPMNIGDLVSLRDLDLNGNEFVGLIPRGLSGMKLERLDLNNNHFMGPIPDFAADKVSFESNNFCLSKPGAMCAFEVMALLDFLGGLGYPQILVDSWSGNNPCDGPWLGIKCNGDGKVEMIILNNFNLSGTLSPSIAKLDSLVGIRLGGNDISGRIPSNWTSLRSLTLLDLSGNNISLPLPSFAKGVKLVIDGNPQLHGAPAPGSVSGSSPGSGSGEVEPPSSDKHNPNPSKDTGPNPKSGSVSPESNNSRRKGLVTIVAPIAGVAAAAFVLIPLSVYCFRKRKGVSEKAGSLVIHPRESSDSNNLLKVVIANDGNGSVSTVTGSGTLNGSADSHVIESGNLVISVQVLRNVTKNFARENELGRGGFGVVYKGELDDGTKIAVKRMESGVITSKALDEFQSEIAVLSKVRHRHLVSLLGYSVEGNERILVYEYMPQGALSMHLFHWKSSQLEPLSWKRRLNIALDVARGMEYLHSLAHQIFIHRDLKSSNILLGDDFRAKVSDFGLVKLAPDGKKSVVTRLAGTFGYLAPEYAVTGKVTTKADVFSFGVVLMELVTGLMALDEDRPEESQYLASWFWHVKSDKEKLMAAVDPALDIKEEMFDIVSIVAELAGHCTAREPNQRPDMSHVVNVLGPLVEKWKPFDDETEEYSGIDYSLPLNQMVKDWQETEGKELSYVDLQDSKSSIPARPTGFAESFTSVDGR 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00173 958 SMART LRR_typ_2 265 288 IPR003591 -
Viun7g00173 958 SMART LRR_typ_2 138 167 IPR003591 -
Viun7g00173 958 SMART LRR_typ_2 191 215 IPR003591 -
Viun7g00173 958 SMART LRR_typ_2 114 137 IPR003591 -
Viun7g00173 958 SMART LRR_typ_2 419 441 IPR003591 -
Viun7g00173 958 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Viun7g00173 958 Pfam Leucine rich repeat N-terminal domain 334 369 IPR013210 -
Viun7g00173 958 FunFam receptor protein kinase TMK1 574 689 - -
Viun7g00173 958 MobiDBLite consensus disorder prediction 454 507 - -
Viun7g00173 958 SUPERFAMILY L domain-like 25 306 - -
Viun7g00173 958 SUPERFAMILY Protein kinase-like (PK-like) 591 888 IPR011009 -
Viun7g00173 958 MobiDBLite consensus disorder prediction 462 507 - -
Viun7g00173 958 SUPERFAMILY L domain-like 331 440 - -
Viun7g00173 958 Pfam Protein tyrosine and serine/threonine kinase 615 888 IPR001245 GO:0004672|GO:0006468
Viun7g00173 958 ProSitePatterns Serine/Threonine protein kinases active-site signature. 737 749 IPR008271 GO:0004672|GO:0006468
Viun7g00173 958 FunFam Receptor-like kinase TMK4 26 326 - -
Viun7g00173 958 MobiDBLite consensus disorder prediction 939 958 - -
Viun7g00173 958 Gene3D Transferase(Phosphotransferase) domain 1 690 909 - -
Viun7g00173 958 FunFam receptor protein kinase TMK1 690 907 - -
Viun7g00173 958 Gene3D Ribonuclease Inhibitor 331 456 IPR032675 -
Viun7g00173 958 SMART serkin_6 612 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g00173 958 FunFam Leucine-rich repeat receptor-like kinase 331 456 - -
Viun7g00173 958 ProSitePatterns Protein kinases ATP-binding region signature. 618 640 IPR017441 GO:0005524
Viun7g00173 958 Gene3D Phosphorylase Kinase; domain 1 576 689 - -
Viun7g00173 958 CDD STKc_IRAK 618 891 - -
Viun7g00173 958 PANTHER OSJNBA0070M12.3 PROTEIN 11 958 - -
Viun7g00173 958 ProSiteProfiles Protein kinase domain profile. 612 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g00173 958 Gene3D Ribonuclease Inhibitor 26 328 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00173 Viun-Chr7 1278009 1281743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00173 80 888 Receptor kinase-like Gene Family AT5G07280 30.584 7.97e-80 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Viun7g00173 PK_Tyr_Ser-Thr 2.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00173 - - gmx:100781857 1556.19