Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00129 ATGGAGGAAGAAGAACCTTCCATAACATCGCCACTTCCAGGAACGTTACACAAGTTCCTCTCCCGCAGTGGCAAGCCTGTCTACGCCGCGAAGCCGCTCACAGTGGTGCGCTCCACCACCAGCAACGGCGGCGCACGTGTTCTCGCCGCGCAGCCAAACCCTAACGAGGACAATCCTCTCCAAGAAGAAGGACAAGGCGAAACCGGCTTCGATGTTTCTTATTTCACCGCACTGAGCAAAAGGCAACAACAACAACGACAAAGGCTTGAGGCGTTTCTCAATGGCACGAACACGAAGGTCGCTTCCAAAGGAGAGTCTCTGAAACCGATGGCGCCAATGGAAGAAAAAGTAGAAGAGGAGGAGGAGGAAGGTGATGAGGCAGAATCAACTCCACCGGTTCAACCGGTTAGTATAGTGTCGGAACCGGTTCGACCGGTGCAGGAAAAAACGGTTACTGATGACGTGGAGGTGGTGGAGGTGCGCAAGGCTGTGGAGAAGAGGAATATTCCTAATCTCGAGGACGGGGAGTTTCCGGAGGAGGCTGGGTGGTTCTTGCTTGGGAGGAAGGTTGAGGTTGCGATTTCCACGGCCAGAGGAGTGAACAGATTGGTGGACAATGAAATCGTTCATTTCAACTTTCCTCTTCCGACTTACTCGAGGAAGTCTCAGTTGATCGTTCGTGTTTCAACCAAGCGTTCTGGAGAGGTTGGGAGGATGCCAATGGAATGGGCAAAGATTGTGATTCCGCTTATGCGTTCTGGAAAGGTCAATGTTCGAGGCCGATGCATTGCTGCCCCAGATAAACTGGAGATGATGCAAGAGATTATGTTTTTAGTGAGCTTTTATATTCACAACTCTGTATTTGCCGACCGTGTTGACACCTCTTGGAGGCTAGAGGCTTGTGGTAAAATTGATGATACTATGTATCCAATTCTTGCCCTGCTAAAAATGCTTGAGATCAAGCCATCTCGAAAGGCTGAATTCACGCCAGAAGATATAGATTCTCGAAAGCGGTTGCTCTATCCAAGTGCTGAGTCAGATGAAGCTGCAGCATTGCCTTTGATCAAGCGAAGAAAGGGTGGCGAGCCTATTCCAGAGCAAAATAATGACGAACAAGCTCTTTCAGAGTCAGCTTTAAACAAAATTGTTGGAGCTGCAGAAATCTATGACTTAAAGGAGAAGGAAGCCCCAAAGACACTTACGTGTAATCTAAAGCCTTACCAGAAGCAGGCCTTGTATTGGATGGGTGAAATCGAGAAGGGAATGGATGTTGAGAGTGCAGAAAGAACTCTGCATCCCTGCTGGTCAGCCTACACTATATGCAAGGGAAGGACTATTTATGTCAATATATTTACCGGAGAAGCTTCAAAGAAATTTCCCAAATCAACTGAGATGGCAAGAGGAGGAATTCTAGCGGATGCAATGGGACTTGGAAAGACCGTTATGACAATTGCTCTGATACTCAGTAATCCAGGCCGAGGCAACTCAGAAAAGAAGGATGCGATAAATGGATATGATGATATTATAGCAAATAAAAGAAAGAACGCTTACGCGATGCATAAAGTTGAGGGTGGCACCCTTATTGTTTGTCCCATGGCTTTGTTAGGTCAATGGAAGGATGAGCTTGAAACGCATTCAAAGCCTGGTAGCATATCCATATTTGTTCATTATGGTGGCGGAAGAACTGATGATCTCTTGTTCATCTCAGGGCATGACGTTGTCTTAACAACTTATGGTGTCCTATCAGCTGAATACAAAAATAATGGAGACAATAGCATCTACCACAAGATCCAATGGTACAGGGTGGTGCTGGACGAAGCTCATAATATAAAAGCCCATAGAAGTCAGGTTTCCCAGGCTGCTTTTGCTCTCTCAGCACACAGCCGCTGGTGTCTAACTGGAACACCGCTTCAGAATAGCTTGGAGGACCTATACAGTCTCTTGTGTTTCTTGCGTGTTGAACCTTGGTGCAACTCGGCATGGTGGCAGAAGTTGATTCAAAGGCCTTATGAGAATGGTGATCCAAGATCACTGAAGCTGGTCAAAGCCATTTTGAGGATGCTAATGCTAAGAAGAACGAAGGAATCGAAAGATAAAGAGGGAAGGCCTATACTTTTCCTGCCTCCAATTGATATTGAATTGATTGAGTGTAAACAATCGGAATCTGAACGGGACTTCTACGAAACCCTTTTCGAGCGATCTAAAGTTCAATTTGATCAGTACGTTGCACAAGGAAATGTTCTACACCATTATGCCAATATCCTTGACCTTCTAATGCAGTTGAGACGCTGTTGTAACCATCCGTTTTTGGTTATGTGCGGAAGCGATTCCCGTAAGTATGCAGACTTAGGCAGACTCGCAAGAAGAATTCTTCAGTCTGATACTGGTTCACCCAACGAAAGCAATCATGATGATCCACAGCAGCAAGCAGAGATGAGCAAACTCGCAGATATATTACTTCTTAACTCTGCTTCTCCGGACTCTATTCAACCTCGTGCATACATCGAAGAGGTTTTGGAGAATATTCAAAAGGGCGATACTGGAGAATGCGCGGTATGTTTGGAATCTCCAGAAGATCCTGTATTTACACCATGTGCTCATAAATTTTGTAGAGAATGTCTGTTCAGTTGCTGGGGCACATCAGCGGGTGGAAAATGTCCAATCTGTCGTAAATTGCTCCAGAAAGATGATCTGATCACTTGTCCATCTGAAAGCCCATTCAAGGTCGATATTAAGAACAATGTGACAGAGTCTTCGAAGGTTTCAAAGCTATTCGAATTCCTGGAACGTATTCTGTACTCACCCTCGGGTGAAAAGAGTATTGTCTTCAGTCAGTGGACTTCATTTTTTGATCTCTTGGAGAATCCATTGAGGCGGAGAGGCATTGGCTTTTTGAGATATGATGGAAAATTGACGCAGAAACAGAGGGAGAAAGTTCTGGATGAATTCAATAAAACAAGGGAGAAAAGGGTTTTGCTGATGTCGCTAAAGGCTGGTGGTGTTGGCTTGAACTTAACTGCAGCCTCAAATGTTTTCATTATGGATCCATGGTGGAATCCTGCTGTTGAGGAGCAAGCAATAATGAGAATTCATCGCATAGGACAAAACCGTAGAGTTAAAGTAAGAAGATTCATTGTGAAGGACACAGTGGAAGATCGTTTGCAACAAGTGCAGGCCAGAAAACAAAGGATGATATCTGGTACCCTCACCGATGACGAGGTTCGATCTGCTAGGATCCAAGACCTCAAAATGCTATTCACGTGA 3264 0.4528 MEEEEPSITSPLPGTLHKFLSRSGKPVYAAKPLTVVRSTTSNGGARVLAAQPNPNEDNPLQEEGQGETGFDVSYFTALSKRQQQQRQRLEAFLNGTNTKVASKGESLKPMAPMEEKVEEEEEEGDEAESTPPVQPVSIVSEPVRPVQEKTVTDDVEVVEVRKAVEKRNIPNLEDGEFPEEAGWFLLGRKVEVAISTARGVNRLVDNEIVHFNFPLPTYSRKSQLIVRVSTKRSGEVGRMPMEWAKIVIPLMRSGKVNVRGRCIAAPDKLEMMQEIMFLVSFYIHNSVFADRVDTSWRLEACGKIDDTMYPILALLKMLEIKPSRKAEFTPEDIDSRKRLLYPSAESDEAAALPLIKRRKGGEPIPEQNNDEQALSESALNKIVGAAEIYDLKEKEAPKTLTCNLKPYQKQALYWMGEIEKGMDVESAERTLHPCWSAYTICKGRTIYVNIFTGEASKKFPKSTEMARGGILADAMGLGKTVMTIALILSNPGRGNSEKKDAINGYDDIIANKRKNAYAMHKVEGGTLIVCPMALLGQWKDELETHSKPGSISIFVHYGGGRTDDLLFISGHDVVLTTYGVLSAEYKNNGDNSIYHKIQWYRVVLDEAHNIKAHRSQVSQAAFALSAHSRWCLTGTPLQNSLEDLYSLLCFLRVEPWCNSAWWQKLIQRPYENGDPRSLKLVKAILRMLMLRRTKESKDKEGRPILFLPPIDIELIECKQSESERDFYETLFERSKVQFDQYVAQGNVLHHYANILDLLMQLRRCCNHPFLVMCGSDSRKYADLGRLARRILQSDTGSPNESNHDDPQQQAEMSKLADILLLNSASPDSIQPRAYIEEVLENIQKGDTGECAVCLESPEDPVFTPCAHKFCRECLFSCWGTSAGGKCPICRKLLQKDDLITCPSESPFKVDIKNNVTESSKVSKLFEFLERILYSPSGEKSIVFSQWTSFFDLLENPLRRRGIGFLRYDGKLTQKQREKVLDEFNKTREKRVLLMSLKAGGVGLNLTAASNVFIMDPWWNPAVEEQAIMRIHRIGQNRRVKVRRFIVKDTVEDRLQQVQARKQRMISGTLTDDEVRSARIQDLKMLFT 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00129 1087 ProSiteProfiles Zinc finger RING-type profile. 850 890 IPR001841 -
Viun7g00129 1087 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 460 654 IPR014001 -
Viun7g00129 1087 ProSitePatterns Zinc finger RING-type signature. 865 874 IPR017907 -
Viun7g00129 1087 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 927 1087 IPR001650 -
Viun7g00129 1087 MobiDBLite consensus disorder prediction 43 67 - -
Viun7g00129 1087 Gene3D - 708 843 IPR027417 -
Viun7g00129 1087 Pfam SNF2-related domain 407 770 IPR000330 GO:0005524|GO:0140658
Viun7g00129 1087 Gene3D - 896 1085 IPR027417 -
Viun7g00129 1087 CDD DEXDc_SHPRH-like 404 692 - -
Viun7g00129 1087 SMART ultradead3 400 671 IPR014001 -
Viun7g00129 1087 MobiDBLite consensus disorder prediction 43 62 - -
Viun7g00129 1087 Pfam Helicase conserved C-terminal domain 928 1034 IPR001650 -
Viun7g00129 1087 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 844 895 IPR013083 -
Viun7g00129 1087 SUPERFAMILY RING/U-box 836 896 - -
Viun7g00129 1087 SMART HIRAN_2 186 283 IPR014905 GO:0003676|GO:0008270|GO:0016818
Viun7g00129 1087 Pfam Zinc finger, C3HC4 type (RING finger) 848 892 - -
Viun7g00129 1087 SMART ring_2 850 889 IPR001841 -
Viun7g00129 1087 SMART helicmild6 951 1034 IPR001650 -
Viun7g00129 1087 FunFam DNA repair protein RAD5B 457 693 - -
Viun7g00129 1087 MobiDBLite consensus disorder prediction 101 138 - -
Viun7g00129 1087 CDD SF2_C_SNF 912 1045 - -
Viun7g00129 1087 Gene3D - 458 704 IPR038718 -
Viun7g00129 1087 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 217 1087 - -
Viun7g00129 1087 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 704 1076 IPR027417 -
Viun7g00129 1087 Pfam HIRAN domain 197 276 IPR014905 GO:0003676|GO:0008270|GO:0016818
Viun7g00129 1087 Coils Coil 110 130 - -
Viun7g00129 1087 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 390 692 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00129 Viun-Chr7 812289 818720 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00129 141 1086 RAD5 or RAD16-like Gene Family AT5G43530 60.415 0.0 1201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Viun7g00129 SNF2_N 1.1e-79 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00129 K15505 - gmx:100806677 1758.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g00129 7 812289 818720 Viun7g00129 7 812289 818720 ECH