Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00121 ATGGATCCCTTAGATGACAGCAGCTGTTGGGATTTTCTCGATTACTCTTTCATCGATCAAGCGCCCCCTGATTTCCTTTGGTCCAATCACAGTTTGAGCACTGAAATTGACATTCCAGATGATGCTGTTGCTTGTGAAGAGAACACCAAGAAGAGGGGGCGTACTGATTCATGCTGTAAGGCAGGATCAAAGGCATGCCGTGAGAAATTGCGGAGGGAGAGACTCAATGAAAGATTCTGTGACCTGAGCTCTGTGTTGGAACCTGGGAGACCTGTGAGAACAGATAAACCATCTATACTTGATGATGCTATCAGAGTGTTGAGCCAACTTAAAACCGAAGCTGAGGAACTCAAAACAACAAATGAAAAATTATTAGAGGAAATAAAATGTTTGAAGGCCGAGAAGAACGAACTTCGTGAAGAGAAACTTGTTCTGAAAGCAGATAAAGAGAGGATTGAGAAGCAGTTGAAATCCTTGCCCATTGCACCAGCAGGGTTTATGGCACCCCCTGTAGCTGCTGCAGCATATCAAGCAGGAATGAACAAAATGGCTGTTTATCCAAACTATGGATACATTCCAATGTGGCAATATCTTCCTCAATCTGCCACAGATACATCTCAAGATCATGAGCTTAGGCCTCCTGCTGCATAG 651 0.4393 MDPLDDSSCWDFLDYSFIDQAPPDFLWSNHSLSTEIDIPDDAVACEENTKKRGRTDSCCKAGSKACREKLRRERLNERFCDLSSVLEPGRPVRTDKPSILDDAIRVLSQLKTEAEELKTTNEKLLEEIKCLKAEKNELREEKLVLKADKERIEKQLKSLPIAPAGFMAPPVAAAAYQAGMNKMAVYPNYGYIPMWQYLPQSATDTSQDHELRPPAA 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00121 216 Coils Coil 100 155 - -
Viun7g00121 216 PANTHER BHLH TRANSCRIPTION FACTOR 7 216 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Viun7g00121 216 FunFam Transcription factor bHLH104 62 143 - -
Viun7g00121 216 Pfam Helix-loop-helix DNA-binding domain 63 110 IPR011598 GO:0046983
Viun7g00121 216 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 59 110 IPR011598 GO:0046983
Viun7g00121 216 SMART finulus 65 116 IPR011598 GO:0046983
Viun7g00121 216 CDD bHLH_AtILR3_like 64 139 - -
Viun7g00121 216 Gene3D - 62 143 IPR036638 GO:0046983
Viun7g00121 216 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 137 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00121 Viun-Chr7 788094 790856 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00121 49 216 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 68.047 6.58e-76 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun7g00121 HLH 1.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00121 - - gmx:100787583 365.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g00121 7 788094 790856 Viun7g00121 7 788094 790856 ECH