Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00120 ATGGATTTTGTGAGCCAAAGACACCTACTCCATATACATACACAAGCTGATTCACCCTGCACAGTTCCTCCAAATCATGATATTCCACACCATTCTGGTTCAAATCTTCCTCTCTTAGCAATCCTTGTGGTGGGAATGTTGTTCACAACTTTCTTCCTCATAGGCTACTACATGTTAGTTATCAAGTGCTGCTTCAATTGGCCCCATGTTAATCACACAAGACTGTTTTCTCTGACAAGACAAGGTGAAGAAGATCCATCTGCAGGATTCTCAGCAGCATCTGAGCCAAGAGGGTTAGAGGAAGCAGTTATCAGGTTAATCCCTGTGATTCATTATAAAGGGGACACAAACTTTGGAGAAAGAAGCAACATTGATGATTGTGCAGTTTGCTTGAGTGAGTTTCAACAAGATGAGAAGCTGAGAGTTATACCAAACTGTAGCCATGTTTTTCACATTGATTGCATAGATGTTTGGCTTCAGAACAACACTCATTGCCCTCTCTGCAGAACAATTGTGTCCTTGACAACCCAACTGAACCTTCTCAGTCCAAGGCCTTCAACTCAAGACCAAAGCCAGAACATTGAAAACCATGTTGGTGATGAAGGTTTTGTTGTGATTGATTTGGATGGTGAAGGTGATAGAGGCCAAAACCTTCAAAGAATAAGACAAGAGTTACCCACCATTATCAGTGTTTCTTCAGCAAAGAAGCTTCATAAAGTTAGCAGCTTGGGAGATGAGTGTATTGGCATCAGAGCCAAAGGTGAAAGCTTTTCATCAGTTCAAGCCATGAGGAGGTCCTTTTCCATGGATTCATCAGTGGATGGAAAGTTTTATGGTGCAATTCAGCAGGTTTTGCAGCAACACCAACAACATGAACATGAACATGAACATGAACTTTTTCATGAGATTAACACAGTTGAAGCCTGTGATGGCAGTGGCAGAGTGAAGAGATCATTCTTTTCTTTTGGACATGGAAGCAGATCAAGAAGTGCTGTTCAACCTCTTTATTTGGACCCCTGA 1020 0.4167 MDFVSQRHLLHIHTQADSPCTVPPNHDIPHHSGSNLPLLAILVVGMLFTTFFLIGYYMLVIKCCFNWPHVNHTRLFSLTRQGEEDPSAGFSAASEPRGLEEAVIRLIPVIHYKGDTNFGERSNIDDCAVCLSEFQQDEKLRVIPNCSHVFHIDCIDVWLQNNTHCPLCRTIVSLTTQLNLLSPRPSTQDQSQNIENHVGDEGFVVIDLDGEGDRGQNLQRIRQELPTIISVSSAKKLHKVSSLGDECIGIRAKGESFSSVQAMRRSFSMDSSVDGKFYGAIQQVLQQHQQHEHEHEHELFHEINTVEACDGSGRVKRSFFSFGHGSRSRSAVQPLYLDP 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00120 339 CDD RING-H2_EL5-like 126 169 - -
Viun7g00120 339 PANTHER RING-H2 FINGER PROTEIN ATL16 21 335 IPR044600 GO:0016567|GO:0016740
Viun7g00120 339 ProSiteProfiles Zinc finger RING-type profile. 127 169 IPR001841 -
Viun7g00120 339 SMART ring_2 127 168 IPR001841 -
Viun7g00120 339 FunFam E3 ubiquitin-protein ligase ATL6 88 175 - -
Viun7g00120 339 Pfam Ring finger domain 125 169 IPR001841 -
Viun7g00120 339 SUPERFAMILY RING/U-box 126 175 - -
Viun7g00120 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 173 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00120 Viun-Chr7 784000 785981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00120 32 339 C3H Transcription Factor Family AT1G04360 39.773 6.19e-69 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00120 - - pvu:PHAVU_007G272700g 461.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02096 1 32304277 32305212 Viun7g00120 7 784000 785981 PCT