Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00117 ATGGATAACCAAAGCCAAGCATATTCCATGGAGAAAATCCAAAGGGAAGAGCATGAGAAGTTGAAGGAGACAAAAGTCCGGTACCGCGGCGTCCGACGGCGACTGTGGGGGAAGTATGCGGCAAAGATCAGAGACCCTTCTAAGCAAGGTTCAATGTTGTGGTCAGGAACCTTTGAGAGTGCTGAAGAAGCAACTAGGGCATATGATCATGCAGCTTTTACCATGAGGGGTCGTGTTGCAATTTTGAATTTTCCTAATATGTACCGTTCTCATGTTAGGGTTTATCCTCAAAATTTATCATCACCATCGTCGTTGTCATCGTCGTCATCATTCGTTACTCATGCGAATGGTTGA 354 0.452 MDNQSQAYSMEKIQREEHEKLKETKVRYRGVRRRLWGKYAAKIRDPSKQGSMLWSGTFESAEEATRAYDHAAFTMRGRVAILNFPNMYRSHVRVYPQNLSSPSSLSSSSSFVTHANG 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00117 117 SMART rav1_2 27 91 IPR001471 GO:0003700|GO:0006355
Viun7g00117 117 ProSiteProfiles AP2/ERF domain profile. 27 85 IPR001471 GO:0003700|GO:0006355
Viun7g00117 117 SUPERFAMILY DNA-binding domain 27 86 IPR016177 GO:0003677
Viun7g00117 117 MobiDBLite consensus disorder prediction 97 117 - -
Viun7g00117 117 PANTHER DNA-BINDING DOMAIN 15 104 IPR044808 GO:0003700|GO:0009873
Viun7g00117 117 Pfam AP2 domain 27 77 IPR001471 GO:0003700|GO:0006355
Viun7g00117 117 Gene3D AP2/ERF domain 26 87 IPR036955 GO:0003700|GO:0006355
Viun7g00117 117 PRINTS Ethylene responsive element binding protein signature 67 87 IPR001471 GO:0003700|GO:0006355
Viun7g00117 117 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Viun7g00117 117 CDD AP2 27 86 IPR001471 GO:0003700|GO:0006355
Viun7g00117 117 FunFam Ethylene-responsive transcription factor 2 26 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00117 Viun-Chr7 754206 754559 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00117 23 88 AP2-EREBP Transcription Factor Family AT3G23230 68.182 2.66e-30 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun7g00117 AP2 3.8e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00117 - - vun:114189870 228.409