Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00116 ATGGATTCTTCTTCCATTCTCTATTCATCACACTCTTCAGAATCCTCAGAGGGATCCCCTCATCACCATCTCCCTTTCAACGAAAACGATCCAGAAGAGATGCTTCTCTATGGCATGATCACATCATATCAAGAGAAAAACAACTCATGCAAACTCATCATCAAAGAAGAAGAGGTGAATTCACAACACCACAAAGGTAGTAATAACAATAATACTAATAGTAAGAGTTTCCGAGGTGTGCGGAGACGACCATGGGGAAAGTTCGCGGCAGAAATAAGAGATTCCACCCGACATGGCATAAGAGTATGGCTTGGAACATTCGACAACGCCGAAGCCGCGGCGTTGGCGTATGACCAAGCCGCTTTTGCCATGCGGGGCTCTGCCGCGATACTCAACTTCCCTGTAGAGAAGGTGAGGGAGTCGTTGAGAGACATGGATTGCTCACTCTCTCAACTTGAAGGTTGCTCTCCCGTTGTGGCCTTGAAGAGAAGACATTCCTTGGGACGCAAAATGGCTGCAAAGAAAAAGAAGAAAGAGACTCAAGAGAGTGATGGTGTTGTTAGGGTAGAGAATGTGGTTGTGTTGGAAGACTTGGGAGAAGAGTATTTAGAACAATTGTTAATGATGTCTTCTAGTGATGCTAGATGTATTTGGTGA 657 0.4505 MDSSSILYSSHSSESSEGSPHHHLPFNENDPEEMLLYGMITSYQEKNNSCKLIIKEEEVNSQHHKGSNNNNTNSKSFRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDNAEAAALAYDQAAFAMRGSAAILNFPVEKVRESLRDMDCSLSQLEGCSPVVALKRRHSLGRKMAAKKKKKETQESDGVVRVENVVVLEDLGEEYLEQLLMMSSSDARCIW 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00116 218 MobiDBLite consensus disorder prediction 1 15 - -
Viun7g00116 218 Gene3D AP2/ERF domain 75 136 IPR036955 GO:0003700|GO:0006355
Viun7g00116 218 Pfam AP2 domain 77 126 IPR001471 GO:0003700|GO:0006355
Viun7g00116 218 ProSiteProfiles AP2/ERF domain profile. 76 134 IPR001471 GO:0003700|GO:0006355
Viun7g00116 218 PANTHER DNA-BINDING DOMAIN 32 208 IPR044808 GO:0003700|GO:0009873
Viun7g00116 218 MobiDBLite consensus disorder prediction 1 28 - -
Viun7g00116 218 PRINTS Ethylene responsive element binding protein signature 116 136 IPR001471 GO:0003700|GO:0006355
Viun7g00116 218 PRINTS Ethylene responsive element binding protein signature 77 88 IPR001471 GO:0003700|GO:0006355
Viun7g00116 218 CDD AP2 77 135 IPR001471 GO:0003700|GO:0006355
Viun7g00116 218 SMART rav1_2 76 140 IPR001471 GO:0003700|GO:0006355
Viun7g00116 218 FunFam Ethylene-responsive transcription factor 2 75 136 - -
Viun7g00116 218 SUPERFAMILY DNA-binding domain 77 136 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00116 Viun-Chr7 740275 741022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00116 24 218 AP2-EREBP Transcription Factor Family AT3G23240 55.779 5.71e-68 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun7g00116 AP2 4.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00116 K14516 - gmx:100780576 275.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02098 1 32314030 32314781 Viun7g00116 7 740275 741022 PCT