Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00115 ATGTCACCAGGAGACATCCATGGTCAATATTCTGACCTTCTGAGACTTTTTGAGCATGGTGGTTTGCCTCCTCGTTCCAACTACTTATTCTTAGGTGATTATGTGGACCGTGGAAAGCAAAGTCTTGAGACAATATCTCTTCTTTTGGCCTACAAGATCAAGTACCCTCAGAACTTTTTCCTACTCAGAGGAAACCATGAATGTGCTTCCATAAACCGAGTCTATGGCTTCTATGATGAATGCAAACGCAGATTCAATGTCAGGCTGTGGAAAATATTCGCAGATTGCTTCAACTGCATGCCTGTGGCAGCCATCATTGATGAAAAAATCTTGTGCATGCACGGAGGACTCTCTCCCGAACTGCACAATCTAAGTCAGATAAACAGTTTGCCACGTCCAACAGAAGTACCTGAGAGTGGTTTACTCTGTGATCTCTTGTGGTCTGATCCCAGTAAAGAAACTGAGGGTTGGGGAGAGAATGAACGTGGAGTTTCATATACTTTTGGTGCCAACTTGGTCACACAATTTCTTGGAAAGCATGATCTTGACTTGATTTGCAGAGCACACCAGGTTGTTGAGGATGGATATGAGTTTTTTGCTAATAGACAACTTGTGACTATCTTTTCTGCTCCTAACTACTGTGGAGAGTTTGACAATGCTGGAGCTATGATGACTGTTGATGAGACACTTATGTGCTCTTTTCAGATACTCAGGCCAGTGGAAACCAGAAAGCCTAAGTTTGGTTTTGGGAGCAAAACTACATTCAAGCAGGCAATTCTTGATGCTACAAGAGTACGTCCTCATTGA 807 0.4287 MSPGDIHGQYSDLLRLFEHGGLPPRSNYLFLGDYVDRGKQSLETISLLLAYKIKYPQNFFLLRGNHECASINRVYGFYDECKRRFNVRLWKIFADCFNCMPVAAIIDEKILCMHGGLSPELHNLSQINSLPRPTEVPESGLLCDLLWSDPSKETEGWGENERGVSYTFGANLVTQFLGKHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMTVDETLMCSFQILRPVETRKPKFGFGSKTTFKQAILDATRVRPH 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00115 268 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 4 245 - -
Viun7g00115 268 PRINTS Serine/threonine phosphatase family signature 124 151 IPR006186 GO:0016787
Viun7g00115 268 PRINTS Serine/threonine phosphatase family signature 95 121 IPR006186 GO:0016787
Viun7g00115 268 PRINTS Serine/threonine phosphatase family signature 61 85 IPR006186 GO:0016787
Viun7g00115 268 PRINTS Serine/threonine phosphatase family signature 28 55 IPR006186 GO:0016787
Viun7g00115 268 PRINTS Serine/threonine phosphatase family signature 181 201 IPR006186 GO:0016787
Viun7g00115 268 PRINTS Serine/threonine phosphatase family signature 203 219 IPR006186 GO:0016787
Viun7g00115 268 FunFam Serine/threonine-protein phosphatase 1 251 - -
Viun7g00115 268 SMART pp2a_7 1 241 IPR006186 GO:0016787
Viun7g00115 268 ProSitePatterns Serine/threonine specific protein phosphatases signature. 62 67 IPR006186 GO:0016787
Viun7g00115 268 Gene3D - 3 248 IPR029052 -
Viun7g00115 268 Pfam Calcineurin-like phosphoesterase 4 191 IPR004843 GO:0016787
Viun7g00115 268 SUPERFAMILY Metallo-dependent phosphatases 4 243 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00115 Viun-Chr7 725129 728113 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00115 4 184 Calmodulin-binding Proteins AT5G63870 34.562 3.07e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00115 K06269 - gmx:100780047 517.694