Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00113 ATGGAACGTGGGGTTCTTGATGGCATAATCACTAGACTGCTTCAAGTCAGAGGGAGACCAGGGAAACAGGTGCAGCTCTCAGAGGCAGAAATCAAACACCTTTGTATGGTTTCTAGGGATATCTTCTTGAAGCAGCCCAATCTCTTAGAACTTGAGCCACCAATTAAGATATGTGGAGACATCCATGGTCAATATTCTGACCTTCTGAGACTTTTTGAGCATGGTGGTTTGCCTCCTCGTTCCAACTACTTATTCTTAGGTGATTATGTGGACCGTGGAAAGCAAAGTCTTGAGACAATATCTCTTCTTTTGGCCTACAAGATCAAGTACCCTCAGAACTTTTTCCTACTCAGAGGAAACCATGAATGTGCTTCCATAAACCGAGTCTATGGCTTCTATGATGAATGCAAACGCAGATTCAATGTCAGGCTGTGGAAAATATTCGCAGATTGCTTCAACTGCATGCCTGTGGCAGCCATCATTGATGAAAAAATCTTGTGCATGCACGGAGGACTCTCTCCCGAACTGCACAATCTAAGTCAGATAAACAGTTTGCCACGTCCAACAGAAGTACCTGAGAGTGGTTTACTCTGTGATCTCTTGTGGTCTGATCCCAGTAAAGAAACTGAGGGTTGGGGAGAGAATGAACGTGGAGTTTCATATACTTTTGGTGCCAACTTGGTCACACAATTTCTTGGAAAGCATGATCTTGACTTGATTTGCAGAGCACACCAGGTTGTTGAGGATGGATATGAGTTTTTTGCTAATAGACAACTTGTGACTATCTTTTCTGCTCCTAACTACTGTGGAGAGTTTGACAATGCTGGAGCTATGATGACTGTTGATGAGACACTTATGTGCTCTTTTCAGATACTCAGGCCAGTGGAAACCAGAAAGCCTAAGTTTGGTTTTGGGAGCAAAACTACATTCAAGCAGGCAATTCTTGATGCTACAAGAGTACGTCCTCATTGA 972 0.4321 MERGVLDGIITRLLQVRGRPGKQVQLSEAEIKHLCMVSRDIFLKQPNLLELEPPIKICGDIHGQYSDLLRLFEHGGLPPRSNYLFLGDYVDRGKQSLETISLLLAYKIKYPQNFFLLRGNHECASINRVYGFYDECKRRFNVRLWKIFADCFNCMPVAAIIDEKILCMHGGLSPELHNLSQINSLPRPTEVPESGLLCDLLWSDPSKETEGWGENERGVSYTFGANLVTQFLGKHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMTVDETLMCSFQILRPVETRKPKFGFGSKTTFKQAILDATRVRPH 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00113 323 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Viun7g00113 323 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Viun7g00113 323 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Viun7g00113 323 PRINTS Serine/threonine phosphatase family signature 258 274 IPR006186 GO:0016787
Viun7g00113 323 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Viun7g00113 323 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Viun7g00113 323 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Viun7g00113 323 Gene3D - 2 303 IPR029052 -
Viun7g00113 323 Pfam Calcineurin-like phosphoesterase 54 246 IPR004843 GO:0016787
Viun7g00113 323 SUPERFAMILY Metallo-dependent phosphatases 18 298 IPR029052 -
Viun7g00113 323 Pfam Serine-threonine protein phosphatase N-terminal domain 6 52 IPR031675 -
Viun7g00113 323 CDD MPP_PP1_PPKL 5 294 - -
Viun7g00113 323 FunFam Serine/threonine-protein phosphatase 1 303 - -
Viun7g00113 323 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 12 300 - -
Viun7g00113 323 SMART pp2a_7 26 296 IPR006186 GO:0016787
Viun7g00113 323 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00113 Viun-Chr7 725129 728404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00113 55 239 Calmodulin-binding Proteins AT5G63870 33.937 2.92e-27 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00113 K06269 - gmx:100780047 619.772