Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00107 ATGGCAGATCTTTCTATCTTTGGAAGTTCTGAGCGTGTCGAGCAAGCGTTCATTACATTAAAAAAGGGTACTCAGTTAGTAAAGTATAGTCGAAAAGGGAAGCCGAAATTTTGTTCGTTCAGACTCTCATCGGATGAAACAAAGCTGATTTGGATTTCTCATGGAAAGGAAAAGAATCTAAAATTAGCTTCTGTTTCACACATCATCCCAGGACAGAGAACTGCCGTCTTTAGAAGATACTTGCGTCCTGAAAAGGATTATCTGTCATTTTCACTGATTTACAAGAAGGGGGAAAGATCACTTGATCTGATCTGCAAGGACCAAGCAGAGGTAGAGATATGGTTTTCATGCCTTAAAGCATTAATTTCCACTGGAGACCGTATTAAGCGTGGAATAAGTGATTTAACCAATGATAGTGTTGACTTAGTTGCTGGAACACTAGAGTTCGCATCAAGCATTGGCCGTAGCAGGTTTTCTTTCGAATCGGTATCTCATGACTCTACTTCGTCTTGGTCCAGATCGGATACAAATATGCTACAGAGGACAAGTGTCGGAGATGGTTCTCGTATTAGCATATCAAGTATTAGCCACTCAAGTAGTGTAGGATCAGGACTAGATGACATAGAATCCCTTGGTGATGTTTTCATATGGGGAGAGGTTTGGGGAGATGGAAATTCATCTGATGGATTGGGGACTCAAGCTTCTAGTAAGATTGATGTGTTGACTCCTAAGGCATTAGAATCTAATGTTGTTCTTGATGTCAATCAGATTGGGCCCGGTGTACGTCACATTGCTTTAGTTACAAGGCAAGGTGAGGTTTTTACATGGGGAGAGGACTCTGGTGGAAGACTTGGCCATGGCTTTGAAAAAGATTTTGGTCGACCTCATCTTGTAGATTCCCTAGCAATTACCAACGTGTCTTTTGTTGCATGTGGTGAATACCATTCATGTGCCGTGTCTGTATCTGGTGACTTGTTCACCTGGGGTGATGCTACAAATAGTTCAGGACTTCTTGGTCATGGCAGTGATGTTAACTACTGTATACCAAAGAGGGTGAGTGGCACTTTAGAGGGACATCAGGTTGTATCCGTAGCATGTGGCGCATGGCATTCAGCATTAGCAACCACCCTTGGGAAATTGTTTACCTTTGGTGATGGAAGATTTGGTGTATTAGGCCATGGAGATCGAGAGTGTGTATCATATCCAAAGCAGGTACAATTATTGAGTGGACACAAGGCTATTAAAGTTGCATGTGGAATTTGGCATTCAGCAGCTATTATAGAGATTATGGACCCTTCTGGTTCAAACCCTTCATCCAAGAAGATCTTCACATGGGGTGATGGTGACCAGTATCGTTTGGGTCATGTTAACAAGGATAGTTACCTTCAACCAACTTGTGTAGCTGCCCTTGCTGATTATAGCTTTAACCAGATTGCATGTGGGTACACTATGACAGTTGCACTCACTGTATCTGGTCATGTTTTTACAATGGGAGGCACATCATATGGTCAACTAGGAAATCCAAATTCTGATGGAAAAGTCCCAATTCTAGTGCGAGATAAGTTGGTAGGTGAGTTCGTGGAGGAAATAGCATGCGGAGCAAATCATGTTGCTGTATTGACTTCAAGAAGTGAACTATATACTTGGGGTAGAGGTGCCAATGGAAGACTAGGACATGGAGACACAGATGACCAGAAAACTCCAACCTTGGTAGAAGCCTTGAAAGATAGGCATGTTAGGAGTATCTCATGTGGTTCTACCTTTACATGCTGTATATGCTTACATAAATGGCTTTCTGGAGTTGATCAATCTGTTTGCTCTGATTGTCGACAACCATTTGGTTTTACCCGAAAAAGGCATAATTGCTATAATTGTGGATTGGTGTTTTGCCATCCTTGTAGTTCAAAAAAGGCTTCTAAAGCAGCATTGGCTCCGACACCTAGCAAACCACATCGTGTGTGTGATGGTTGTTATGCTAAGCTAAAAGGTGGTGGTGGTGGTGGTGGTGATACTGCTTCAAACTTAAGTAAAGAAATTAGTCGTCCTTCTAGTTCCTCATATGGAAGGGAAAGATTTGAACGGGGAGAGGTGAAGTCTTCCAGAATTCTCTTGCCTCCCATTACAGAACCCATAAAATACCTTGAGATCAGGACTATTAAGCATGGAAATATAGATGAGACTTCTTCCATGATTCGAGCAGCTCAAGTTCCTATATCTTTGCAACTGAAAGATGTGGCATTTCCAATTTCGCTGAGTTCTGCACAGAATTTTTTCAAGCCTCTTATTCAGTCAGGTCATCCTCAACCTCCACCTCCACCAATTAGACCTATGTCACCATATGCTAAAAAAAGACCACCAAGCCCACCTCGTTCTACCTCCCCTGGATTTTCAAGAAGCCTTATTGATAATTTAAAGAAGAAAAATGATCATATGAGTCAAGAATTCTCAAAATTGCAAAACAAAAATAAAAGTTTGAGGCAGAAGAATGACACACAAGACATGAAGATTCAAGAGCTTCACAAAGTTCTTGAAGAGGAATCTTCTAAGCTTAGGGAAGCAAAGGATTTTATTAAGTCCATGACAGATAAGTTGAGTGAAGTGATTGAGACTTTGCAATCTGAGACTGGCAATGAGACTTTGAGAACCATGCATGCTCAAGCTGAAGAGTTTCTTGATGAAGAAAAACGTTTGGAAGCTTCTTCCTCTCGACTGAGCCTCAAGTCTAAGCCACAAAGTGCACCTGATTTACCTTCCTCGGATAGTAACTCTTCTGGGGTTGTTCCATCCCAAGACGGAGAAAATACTTTTGAAGAAACCAGCAACTCATCTACATCTAGTACACTAGTGAGTCCACCAAACTCAAGAAATATTTCAAGATTAAGGGACTCCAGCATACATTTGACAGAAGGAGAAAGATCAATCATTGAACAATTTGAGTCAGGTGTTTATGTCACCCTCGTTGTACTACCTAATGGTTACAAAGTTTTCAAACGAATTAGATTCAGTAAACGAAGATTCAATGAGCAGCAAGCAGAAGAATGGTGGAACCAAAACAAAGATAAGGTGTATAGTAAATACATTCCACCACCACCCACAAAAAATGCCATTACTGGACCATCTGTTACCTCTACAAATGCTGAAGAGAATAGTGAGGCATGA 3159 0.4122 MADLSIFGSSERVEQAFITLKKGTQLVKYSRKGKPKFCSFRLSSDETKLIWISHGKEKNLKLASVSHIIPGQRTAVFRRYLRPEKDYLSFSLIYKKGERSLDLICKDQAEVEIWFSCLKALISTGDRIKRGISDLTNDSVDLVAGTLEFASSIGRSRFSFESVSHDSTSSWSRSDTNMLQRTSVGDGSRISISSISHSSSVGSGLDDIESLGDVFIWGEVWGDGNSSDGLGTQASSKIDVLTPKALESNVVLDVNQIGPGVRHIALVTRQGEVFTWGEDSGGRLGHGFEKDFGRPHLVDSLAITNVSFVACGEYHSCAVSVSGDLFTWGDATNSSGLLGHGSDVNYCIPKRVSGTLEGHQVVSVACGAWHSALATTLGKLFTFGDGRFGVLGHGDRECVSYPKQVQLLSGHKAIKVACGIWHSAAIIEIMDPSGSNPSSKKIFTWGDGDQYRLGHVNKDSYLQPTCVAALADYSFNQIACGYTMTVALTVSGHVFTMGGTSYGQLGNPNSDGKVPILVRDKLVGEFVEEIACGANHVAVLTSRSELYTWGRGANGRLGHGDTDDQKTPTLVEALKDRHVRSISCGSTFTCCICLHKWLSGVDQSVCSDCRQPFGFTRKRHNCYNCGLVFCHPCSSKKASKAALAPTPSKPHRVCDGCYAKLKGGGGGGGDTASNLSKEISRPSSSSYGRERFERGEVKSSRILLPPITEPIKYLEIRTIKHGNIDETSSMIRAAQVPISLQLKDVAFPISLSSAQNFFKPLIQSGHPQPPPPPIRPMSPYAKKRPPSPPRSTSPGFSRSLIDNLKKKNDHMSQEFSKLQNKNKSLRQKNDTQDMKIQELHKVLEEESSKLREAKDFIKSMTDKLSEVIETLQSETGNETLRTMHAQAEEFLDEEKRLEASSSRLSLKSKPQSAPDLPSSDSNSSGVVPSQDGENTFEETSNSSTSSTLVSPPNSRNISRLRDSSIHLTEGERSIIEQFESGVYVTLVVLPNGYKVFKRIRFSKRRFNEQQAEEWWNQNKDKVYSKYIPPPPTKNAITGPSVTSTNAEENSEA 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00107 1052 CDD FYVE_scVPS27p_like 604 658 - -
Viun7g00107 1052 PRINTS Chromosome condensation regulator RCC1 signature 380 394 IPR000408 -
Viun7g00107 1052 PRINTS Chromosome condensation regulator RCC1 signature 273 289 IPR000408 -
Viun7g00107 1052 PRINTS Chromosome condensation regulator RCC1 signature 364 380 IPR000408 -
Viun7g00107 1052 PRINTS Chromosome condensation regulator RCC1 signature 323 339 IPR000408 -
Viun7g00107 1052 PRINTS Chromosome condensation regulator RCC1 signature 481 499 IPR000408 -
Viun7g00107 1052 PRINTS Chromosome condensation regulator RCC1 signature 539 560 IPR000408 -
Viun7g00107 1052 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 378 429 IPR000408 -
Viun7g00107 1052 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 440 491 IPR000408 -
Viun7g00107 1052 SMART fyve_4 595 663 IPR000306 GO:0046872
Viun7g00107 1052 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 602 665 IPR013083 -
Viun7g00107 1052 Pfam Transcription factor regulating root and shoot growth via Pin3 972 1026 IPR013591 -
Viun7g00107 1052 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 323 377 IPR000408 -
Viun7g00107 1052 SUPERFAMILY RCC1/BLIP-II 212 597 IPR009091 -
Viun7g00107 1052 SUPERFAMILY FYVE/PHD zinc finger 596 662 IPR011011 -
Viun7g00107 1052 FunFam PH, RCC1 and FYVE domains-containing protein 1 183 431 - -
Viun7g00107 1052 ProSiteProfiles BRX domain profile. 972 1027 IPR013591 -
Viun7g00107 1052 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 600 662 IPR017455 -
Viun7g00107 1052 MobiDBLite consensus disorder prediction 903 961 - -
Viun7g00107 1052 MobiDBLite consensus disorder prediction 665 689 - -
Viun7g00107 1052 Gene3D - 151 432 IPR009091 -
Viun7g00107 1052 Gene3D - 433 601 IPR009091 -
Viun7g00107 1052 Gene3D - 12 130 IPR011993 -
Viun7g00107 1052 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 492 543 IPR000408 -
Viun7g00107 1052 MobiDBLite consensus disorder prediction 764 792 - -
Viun7g00107 1052 MobiDBLite consensus disorder prediction 896 961 - -
Viun7g00107 1052 MobiDBLite consensus disorder prediction 802 833 - -
Viun7g00107 1052 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 416 426 IPR000408 -
Viun7g00107 1052 MobiDBLite consensus disorder prediction 1036 1052 - -
Viun7g00107 1052 Pfam Regulator of chromosome condensation (RCC1) repeat 442 488 IPR000408 -
Viun7g00107 1052 Pfam Regulator of chromosome condensation (RCC1) repeat 378 426 IPR000408 -
Viun7g00107 1052 Pfam Regulator of chromosome condensation (RCC1) repeat 491 540 IPR000408 -
Viun7g00107 1052 Pfam Regulator of chromosome condensation (RCC1) repeat 545 592 IPR000408 -
Viun7g00107 1052 Pfam Regulator of chromosome condensation (RCC1) repeat 322 373 IPR000408 -
Viun7g00107 1052 Pfam Regulator of chromosome condensation (RCC1) repeat 271 319 IPR000408 -
Viun7g00107 1052 Pfam FYVE zinc finger 596 661 IPR000306 GO:0046872
Viun7g00107 1052 Pfam Pleckstrin homology domain 14 122 IPR001849 -
Viun7g00107 1052 MobiDBLite consensus disorder prediction 1025 1052 - -
Viun7g00107 1052 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 544 595 IPR000408 -
Viun7g00107 1052 SUPERFAMILY PH domain-like 13 122 - -
Viun7g00107 1052 CDD PH_PLC_plant-like 12 123 - -
Viun7g00107 1052 Coils Coil 801 828 - -
Viun7g00107 1052 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 271 322 IPR000408 -
Viun7g00107 1052 MobiDBLite consensus disorder prediction 760 833 - -
Viun7g00107 1052 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 56 858 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00107 Viun-Chr7 674908 681566 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00107 969 1050 Major Intrinsic Protein MIP AT1G31880 32.927 1.39e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00107 - - gmx:100778984 1586.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g00107 7 674908 681566 Viun7g00107 7 674908 681566 ECH