Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00100 ATGGCTCCGAAAAAAGGTGTGAAAGCTGCAGTAGCAGCACCGAAGAAGAAGCTAGGGACTATTAAGGAGAAAGTTACGAACCCGTTGTTCGAGAAGCGTCCGAAGCAGTTCGGGATCGGAGGGGCGTTGCCTCCGAAGCGGGACCTGACTCGGTTCGTGAAATGGCCGAAGACCGTTCAAATCCAACGCAAGAAACGCATCCTCAAGCAGAGGCTAAAGGTCCCTCCCGCACTCAATCAGTTCACCAAAACCCTCGACAAGAATCTCGCAACCAACCTATTCAAGATGCTGCTGAAGTACAGGCCTGAAGACAAAGCAGAGAAGAAGGAGCGTTTGTTGAAGAGGGCTCAGGCTGAGGCTGATGGGAAAAGTGTTGAAGCTAAGAAGCCTATTGTTGTCAAATATGGTCTCAATCATGTTACTTACCTTATTGAGCAGAATAAAGCGCAACTTGTTGTGATTGCTCATGATGTGGACCCAATCGAGCTTGTGGTCTGGCTTCCGGCACTCTGCAGGAAGATGGAAATTCCATACTGCATTGTCAAGGGCAAAGCACGCTTGGGAACGGTTGTCCACAAGAAAACGGCTTCAGTTTTGTGCTTGACAACTGTCAAGAATGAAGATAAATTGGAGTTCAGTAGAATACTAGAAGCTATTAAGGCTAACTTCAATGACAAGTATGATGAGTACAGAAAGAAGTGGGGTGGTGGAATCATGGGTTCCAAATCCCAAGCCAAGACCAGGGCCAAGGAGAAGCTCATTGCCAAAGAAGCGGCCCAAAGAATGTCCTAG 792 0.4785 MAPKKGVKAAVAAPKKKLGTIKEKVTNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKTVQIQRKKRILKQRLKVPPALNQFTKTLDKNLATNLFKMLLKYRPEDKAEKKERLLKRAQAEADGKSVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGTVVHKKTASVLCLTTVKNEDKLEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKTRAKEKLIAKEAAQRMS 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00100 263 PRINTS Ribosomal protein L7A/RS6 family signature 178 192 IPR018492 -
Viun7g00100 263 PRINTS Ribosomal protein L7A/RS6 family signature 152 165 IPR018492 -
Viun7g00100 263 PRINTS Ribosomal protein L7A/RS6 family signature 133 147 IPR018492 -
Viun7g00100 263 PRINTS Ribosomal protein L7A/RS6 family signature 168 178 IPR018492 -
Viun7g00100 263 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 123 210 IPR004038 -
Viun7g00100 263 PRINTS Ribosomal protein L7A family signature 51 68 IPR001921 -
Viun7g00100 263 PRINTS Ribosomal protein L7A family signature 190 214 IPR001921 -
Viun7g00100 263 PRINTS Ribosomal protein L7A family signature 34 51 IPR001921 -
Viun7g00100 263 PRINTS Ribosomal protein L7A family signature 95 108 IPR001921 -
Viun7g00100 263 PRINTS Ribosomal protein L7A family signature 129 149 IPR001921 -
Viun7g00100 263 PRINTS Ribosomal protein L7A family signature 71 90 IPR001921 -
Viun7g00100 263 PRINTS Ribosomal protein L7A family signature 222 242 IPR001921 -
Viun7g00100 263 SUPERFAMILY L30e-like 93 234 IPR029064 -
Viun7g00100 263 ProSitePatterns Ribosomal protein L7Ae signature. 171 188 IPR004037 GO:0042254|GO:1990904
Viun7g00100 263 Gene3D - 55 238 IPR029064 -
Viun7g00100 263 Coils Coil 106 126 - -
Viun7g00100 263 FunFam 60S ribosomal protein L7a 55 238 - -
Viun7g00100 263 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 47 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00100 Viun-Chr7 649326 651954 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00100 1 263 Cytoplasmic Ribosomal Protein Gene Family AT3G62870 84.411 3.21e-165 456