LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun7g00051	ATGAATGATGATGATGGTCCTGTGATTGTGAAGGAAGAGTTTTCTCCACAACCGCTTGAGGGGCTTCATGAAAGTGCTCCTCCACCGTTCCTCACAAAGACTTACGACATAGTCGATGATGTTTCCACTGATGACATAGTTTCATGGAGCAGAGGAAACAACAGCTTCGTTGTGTGGGATCCTCAAGCCTTTTCCATCACTCTTCTCCCCAAATACTTCAAACACAACAACTTCTCCAGCTTTGTCAGACAGCTCAACACCTATGGGTTTAGAAAGGTGGATCCTGATAAATGGGAGTTTGCCAATGAAGGGTTTCTCAGAGGACAAAGGCATCTATTGAAGATGATAAGGAGGAGGAAGAGCAGTCATCAACCTCAGCCACTGCAACGATCTCTTGAGCATTGTGTTGAAGTAGGGAGGTTTGGATTAGATGGAGAAATGGATGGGTTGAAACGTGACAAGCAAGTTCTGATGATGGAGCTGGTGAAACTCAGACACCAACAGCAGAACACAAAGAACCATCTTCAATCAATGGAAAGTAGGCTCAGAAAGACCGAACAGAAACAGCAGCAGATGATGAAGTTCTTGGGAAGGGCAATGCAGAACCCCAACTTCTTGCAACAATTGGTTCAACAAAGGGAGTGGAGGAAGGAGCTGGAAGAAGCTTTTTCCAACAAGAGAAGAAGGCCTATTTGTGATGCTGAAGAATGCTCAGATTTGGTTAAACTTGAACAAGAGGAGTATGATGATGAAATGTCAGAGCTTGAAGTTTCTGACATAGAGCTTGCTATGAACATGGAGGAACAAAGTGGTGAGGAGGAGAAAGGAGGTGAAGCTGAAAGTAGAAATGAAGGCATTGAGGAAGTACTGTGGGAAGAACTTCTGAATGAGGGTGTTGAAGAAGATCTACTAGCATTGGAAGATGATGATGATAATGAAGATGTAACTTTGTTGTCTGAGGAACTTGGTTATTTAGCTTCCAAGTCCTAA	990	0.4343	MNDDDGPVIVKEEFSPQPLEGLHESAPPPFLTKTYDIVDDVSTDDIVSWSRGNNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEGFLRGQRHLLKMIRRRKSSHQPQPLQRSLEHCVEVGRFGLDGEMDGLKRDKQVLMMELVKLRHQQQNTKNHLQSMESRLRKTEQKQQQMMKFLGRAMQNPNFLQQLVQQREWRKELEEAFSNKRRRPICDAEECSDLVKLEQEEYDDEMSELEVSDIELAMNMEEQSGEEEKGGEAESRNEGIEEVLWEELLNEGVEEDLLALEDDDDNEDVTLLSEELGYLASKS	329

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun7g00051	329	FunFam	Heat shock transcription factor 1	23	120	-	-
	Viun7g00051	329	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	16	247	IPR027725	-
	Viun7g00051	329	Coils	Coil	147	188	-	-
	Viun7g00051	329	SUPERFAMILY	"Winged helix" DNA-binding domain	26	119	IPR036390	-
	Viun7g00051	329	MobiDBLite	consensus disorder prediction	268	287	-	-
	Viun7g00051	329	ProSitePatterns	HSF-type DNA-binding domain signature.	69	93	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Viun7g00051	329	MobiDBLite	consensus disorder prediction	265	287	-	-
	Viun7g00051	329	PRINTS	Heat shock factor (HSF) domain signature	81	93	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Viun7g00051	329	PRINTS	Heat shock factor (HSF) domain signature	30	53	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Viun7g00051	329	PRINTS	Heat shock factor (HSF) domain signature	68	80	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Viun7g00051	329	Pfam	HSF-type DNA-binding	30	119	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Viun7g00051	329	Gene3D	-	22	120	IPR036388	-
	Viun7g00051	329	SMART	hsfneu3	26	119	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun7g00051	Viun-Chr7	289569	291186	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun7g00051	16	329	HSF	AT3G22830	54.017	2.66e-127	368

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Viun7g00051		HSF_DNA-bind	1.1e-31	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun7g00051	K09419		-	gmx:100806789	431.409