Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00030 ATGGAAGCGTCGCCGCCACCAAACACCATCCTCGGTAGGTACCAGCTCACGCGATTCCTTGGCCGCGGCAACTTCGCCAAGGTGTACCAGGCGCGCTCACTCGTGGACGGCGCCACGGTCGCCGTGAAGGTCATCGACAAGTCCAAGACGGTCGACGCCGCCATGGAGCCCCGCATCGTGCGCGAGATCGACGCCATGCGCCGCCTGCAGAACCATCCAAACATCCTCAAAATCCACGAGGTTCTCGCCACGAAGACCAAAATTTACCTCGTTGTCGACTACGCCGGCGGCGGCGAGCTCTTCTCCAAGCTCTCCCGGCGCGGCCGCATCCCGGAGCCCCTGGCGCGGCGATACTTCTCCCAACTCGTCTCTGCGCTCCTCTTCTGCCACCGCCACGGCATCGCGCACCGCGACCTCAAGCCGCAGAACCTCCTCCTCGACGCCGCCGGCGACCTCAAGGTCTCCGACTTCGGCCTCTCCGCGCTCCCGGAGCACCTACGTGATAACCTCCTCCACACCGCATGCGGCACGCCGGCCTTCACCGCGCCGGAGATCCTACGCCGCGTCGGCTACGATGGCTCGAAGGCCGACGCTTGGTCCTGCGGTGTCATTCTCTACAACCTTCTCGCCGGCCACCTCCCCTTTGACGACTCGAACATTCCGGCCATGTGCCGCAGAATCTCCCGCCGCGACTACCAGTTCCCGGCGTGGATCTCAAAATCCGCGCGCAGCCTCATCCACCAGTTGCTGGACCCCAACCCTAAATCGCGAATTTCGCTTGAAAGAGTTTTCGATAACAGATGGTTGAAGGATAAGAAGCATGTTTGGTGTAACGTGTTGGAGGAGAGTGTGGTGGAGTCTGATTTATACAACAAGTGCTGCGACGGTTACAAATTGGGGATGAACGCTTTTGACATAATATCAATGTCGTCGGGGTTGGACTTGCGGGGGCTGTTCGAAACGACGTCGGAGAAGGGGAGGCGGAGGGAGAAAAGGTTCAGTTCGGAGAAGAGCGTGGGAACGGTGGAGGCGAAGGTGAAGGAGGTTGCGGAGAGGTTAGGGTTTAGGGTTGAGGTTGGAAAGAACGGTGCAATTGGGTTGGGAAAGGGGAAGGTGGGTTTGGTCGTTGAGGTGTTTGAGATTGTGTCCGAGTTACTCCTTGTGGCTATTAAAGTGGTGGATGGTGCCATGGAGTTTGACCAGCTTCATTGGGATGATTGGAGACTTGGCCTTGAAGATGTTGTTCTCTCATGGCATCACAATGAGTAA 1269 0.5847 MEASPPPNTILGRYQLTRFLGRGNFAKVYQARSLVDGATVAVKVIDKSKTVDAAMEPRIVREIDAMRRLQNHPNILKIHEVLATKTKIYLVVDYAGGGELFSKLSRRGRIPEPLARRYFSQLVSALLFCHRHGIAHRDLKPQNLLLDAAGDLKVSDFGLSALPEHLRDNLLHTACGTPAFTAPEILRRVGYDGSKADAWSCGVILYNLLAGHLPFDDSNIPAMCRRISRRDYQFPAWISKSARSLIHQLLDPNPKSRISLERVFDNRWLKDKKHVWCNVLEESVVESDLYNKCCDGYKLGMNAFDIISMSSGLDLRGLFETTSEKGRRREKRFSSEKSVGTVEAKVKEVAERLGFRVEVGKNGAIGLGKGKVGLVVEVFEIVSELLLVAIKVVDGAMEFDQLHWDDWRLGLEDVVLSWHHNE 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00030 422 Pfam Protein kinase domain 14 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g00030 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Viun7g00030 422 ProSiteProfiles Protein kinase domain profile. 14 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g00030 422 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524
Viun7g00030 422 Gene3D Transferase(Phosphotransferase) domain 1 6 303 - -
Viun7g00030 422 CDD CIPK_C 302 411 - -
Viun7g00030 422 FunFam Non-specific serine/threonine protein kinase 7 99 - -
Viun7g00030 422 SUPERFAMILY Protein kinase-like (PK-like) 10 277 IPR011009 -
Viun7g00030 422 ProSiteProfiles NAF domain profile. 296 320 IPR018451 GO:0007165
Viun7g00030 422 Gene3D Kinase associated domain 1, KA1 304 416 - -
Viun7g00030 422 Pfam NAF domain 301 358 IPR004041 GO:0007165
Viun7g00030 422 FunFam Non-specific serine/threonine protein kinase 5 295 - -
Viun7g00030 422 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 9 366 - -
Viun7g00030 422 SMART serkin_6 14 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00030 Viun-Chr7 174626 176155 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00030 3 421 Miscellaneous Gene Families AT3G23000 55.765 3.16e-161 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Viun7g00030 Pkinase 1.4e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00030 K12761 - gmx:100305372 708.753