Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00011 ATGACACCCCTCAAAATTCATCACTTCCTCCTTCTCATGTTCATCTTCTTCTTCTTCTTTTTGCTCCCATCTTCCCACGCCCAAACGCCACGTCAGATGAACAACACGGGCTTCACGTGCACGGGCACCCGCACCTGCGCCGCCTACGCCTTCTACCGCGCCTCCGCCCCCAACTTCCTGGACCTGGCCGCCGTGGGCGACCTCTTCGAGGTGAGCCGCCAAATGATCGCCACGCCGAGCAACATCTCCTCCGTGTCCTCCGCCCTGGTCGAAGACCAGCCCCTCTTCGTCCCCCTGAGCTGCTCCTGCAATCCTGTGAATGCCACCTTTGGTTCCCTCTCCTACGCCAACATCTCCTACACCATCCAACCCAACGACACCTTCTTCGTCGTCTCCACCTACAAGTTCAACAACCTCACCACCTACCCTTCCGTCGAAACCGTCAACCCTACCTTGGTCGCCACCAACCTCTCCATCGGCCAGGTCACCATCTTCCCTGTCTTCTGCAAATGCCCCGACACCAACAACACCAATTACATGATCTCCTACGTTGTGCAACCCGAGGACAACATCTCCTCCATTGCCTCAGCTTTTGGGGTTCAGGAACAAGCTATAATTGACGTCAACAACGACACGCTATATGACTACGACACCATTTTCATCCCTGTGGAGCAGCTTCCGTCTCTGTCGCAGCCTGCGGTGGCTCCGGCTGCGCCGCCTGGTGGGAATGGGACTGAGAGTGGGAGTGGGAGTGGCAGGGATAGGACGGGAACTGTTAGAGGGTTGGGGATTGGGTTGGGGGTCGTGGGGTTGTTGCTGGTGTTGGTGAGTGGGGTGTGGCTGTGGAGAGAGTTTGTGATGAAGAAGAGGCTGGGAGATGAGGATGAGGATGTGGAGGGAGGGAAGAAGAAGGTGTATTCGGGAGGGAAAGAGGGTCAGAAAGGTGGTTTGGATTTGAAACTGATGGCGAATGTATCGGATTGTTTGGACAAGTATAGGGTTTTTGATATTGAGGAACTGGTGGAGGCCACGGATGGGTTTGATGAAAGGTCCTTGATTGAAGGATCCGTTTACAAAGGGGAGATTGATGGGGAGCTCTTTGCCATCAAGAAGATGAAGTGGAATGCCTATGAGGAACTCAAGATCTTGCAGAAGGTAAACCATGGGAATCTGGTGAAGTTGGAGGGATTCTGCATAGACCAAGAAGAAGCAAACTGCTATCTAGTGTATGAATATGTGGAGAATGGATCTCTATACTCGTGGTTGCATGAGGAGAGAAAGGAAAAGTTGAACTGGAAAACAAGGCTAAGAATAGGCATTGACATTGCCAATGGCCTCCAATACATCCACGAGCACACAAGGCCACGAGTTGTGCACAAAGACATAAAGAGCAGCAACATTCTGTTGGACTACAACAAGAGAGCGAAAATTGCAAATTTTGGGCTTGCAAAGTCTGGAATGAATGCCATCACCATGCACATTGTGGGAACACAGGGCTACATTGCCCCTGAATATCTGGCTGATGGAGTGGTGTCCACAAAGATGGATGTGTTCTCTTTTGGTGTTGTGTTACTTGAACTAATTTCTGGGAAGGAAGCCATTGATAAGGAGGGAAATCTGTTGTGGGCAAGTGCTATGAGAACCTTTGAAGTGGAGAGTGAGCAAGAGAAGGCTAGGAGACTGAGGGAATGGATGGATAAGGACATTTTAAGGGAGACATGCTCAATGGAAAGTTTGATGGGTGTTCTCACTGTTGCAATTGCTTGCTTGCACAAAGACCAGTCAAAGAGGCCAAGCATAATGGACATTGTCTATGCACTCTGTAAAAGTGAAGATTTGGGCTTTGACATCTCAGATGATGGCCTTGGCTCACCACGGGTGGTGGCTAGGTAG 1893 0.5077 MTPLKIHHFLLLMFIFFFFFLLPSSHAQTPRQMNNTGFTCTGTRTCAAYAFYRASAPNFLDLAAVGDLFEVSRQMIATPSNISSVSSALVEDQPLFVPLSCSCNPVNATFGSLSYANISYTIQPNDTFFVVSTYKFNNLTTYPSVETVNPTLVATNLSIGQVTIFPVFCKCPDTNNTNYMISYVVQPEDNISSIASAFGVQEQAIIDVNNDTLYDYDTIFIPVEQLPSLSQPAVAPAAPPGGNGTESGSGSGRDRTGTVRGLGIGLGVVGLLLVLVSGVWLWREFVMKKRLGDEDEDVEGGKKKVYSGGKEGQKGGLDLKLMANVSDCLDKYRVFDIEELVEATDGFDERSLIEGSVYKGEIDGELFAIKKMKWNAYEELKILQKVNHGNLVKLEGFCIDQEEANCYLVYEYVENGSLYSWLHEERKEKLNWKTRLRIGIDIANGLQYIHEHTRPRVVHKDIKSSNILLDYNKRAKIANFGLAKSGMNAITMHIVGTQGYIAPEYLADGVVSTKMDVFSFGVVLLELISGKEAIDKEGNLLWASAMRTFEVESEQEKARRLREWMDKDILRETCSMESLMGVLTVAIACLHKDQSKRPSIMDIVYALCKSEDLGFDISDDGLGSPRVVAR 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00011 630 ProSiteProfiles Protein kinase domain profile. 306 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g00011 630 ProSiteProfiles LysM domain profile. 181 227 IPR018392 -
Viun7g00011 630 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672|GO:0006468
Viun7g00011 630 CDD LysM 181 221 IPR018392 -
Viun7g00011 630 SUPERFAMILY Protein kinase-like (PK-like) 331 607 IPR011009 -
Viun7g00011 630 FunFam PTI1-like tyrosine-protein kinase 3 413 612 - -
Viun7g00011 630 Pfam Protein kinase domain 364 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g00011 630 MobiDBLite consensus disorder prediction 231 254 - -
Viun7g00011 630 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 14 609 - -
Viun7g00011 630 SMART serkin_6 347 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g00011 630 Gene3D Phosphorylase Kinase; domain 1 318 412 - -
Viun7g00011 630 SMART LysM_2 119 166 IPR018392 -
Viun7g00011 630 SMART LysM_2 182 222 IPR018392 -
Viun7g00011 630 Pfam LysM domain 183 221 IPR018392 -
Viun7g00011 630 Gene3D LysM domain 180 222 IPR036779 -
Viun7g00011 630 Gene3D Transferase(Phosphotransferase) domain 1 413 616 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00011 Viun-Chr7 114521 118486 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00011 37 609 Receptor kinase-like Gene Family AT2G23770 33.333 5.72e-84 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Viun7g00011 Pkinase 3.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00011 - - gmx:100802872 889.412