Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00010 ATGGAAAGCAGAGTGGTATTTGAGAGTGATCTGAACCTCAAGGCAACGGAACTTAGATTAGGGTTGCCAGGGACAGAGGAAAAGGAAGACAAGAACCTGCATACACATGTTGTTATCAGAAACAACAAAAGGCAAGTGCGTGAAACTTCTCAAGACTCTGTTTCCATTTCCAAGGCCTCACATCACCAACAACACGTGGAGACTGTTTCAGCCCCTCCACCCAAGGCAAAGATAGTAGGGTGGCCACCAATCAGATCCTACAGGAAGAACAGTGTGGAGGGTGAGGGGGATGGGATCTTTGTGAAAGTGAGCATGGATGGAGCACCTTACCTCAGAAAGATTGACTTGAAAGTCTACAGGGGATATCCTGAACTACTCAAAGCTTTAGAAACCATGTTCAAGTTGGCCATAGGTGAGTACTCTGAAAGAGAGGGTTATAAGGGGTCTGAATATGCTCCTACATATGAAGACAAGGATGGTGACTGGATGCTAGTTGGAGATGTTCCATGGGACATGTTTATGACTTCTTGCAAAAGGCTACGAATCATGAAAGGCTCGGAAGCAAGAGGGCTGGGTTGTGGTGTATGA 588 0.4609 MESRVVFESDLNLKATELRLGLPGTEEKEDKNLHTHVVIRNNKRQVRETSQDSVSISKASHHQQHVETVSAPPPKAKIVGWPPIRSYRKNSVEGEGDGIFVKVSMDGAPYLRKIDLKVYRGYPELLKALETMFKLAIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFMTSCKRLRIMKGSEARGLGCGV 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00010 195 SUPERFAMILY CAD & PB1 domains 93 184 - -
Viun7g00010 195 Pfam AUX/IAA family 16 192 IPR033389 -
Viun7g00010 195 Gene3D - 93 195 - -
Viun7g00010 195 ProSiteProfiles PB1 domain profile. 98 185 IPR000270 GO:0005515
Viun7g00010 195 FunFam Auxin-responsive protein 93 195 - -
Viun7g00010 195 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 189 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00010 Viun-Chr7 107957 109668 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00010 101 191 B3 DNA Binding Superfamily AT2G46530 38.462 1.48e-12 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Viun7g00010 AUX_IAA 9.3e-52 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00010 K14484 - gmx:100800212 325.865