Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00004 ATGGAAACTGCGCTCACTTGCTTCTTCTGTGGCAGAGTCCCACCCACGCCCAAATTGGGGCCTGCTGCAACTGCAACTGCAACTCCAACTCACCACTTCCCTTGTAACAATGCCTCCACCCACCTGCGTTCTTCCTTCCCCCCTTCGTTTCGACTCTATCGCCTAATTCCGAACGCTACTAACACCAGCCAACCCAAGGTTTCCACCAACTCTAAAACCAGAAGAAGGAGAAGAAGAAGTTGCGAGACTCAGGTGGTGGTGGAGGACGCTGCTGCTGTCCATCACAACGGAGACCCAATTGGGAAGAAGGATCTCGGGAAGAGTGTTACGAGATGGATTCGCGACAGCATGAGGGCCATGTCATCTGATTTAGCTGCGGCGGAGATGCAGGGAGAGATGGAGTTGTGGGAGCGCATGGGACCGGGTCTCACTTTTATTATGCAGGCACAGCCCTATCTCAATGCTGTTCCTATGCCCATTGGCCTTGAAGGTGTTTGCTTGAAGGCCTGCACGCACTACCCCACTCTGTTCGACCATTTTCAGAGGGAGCTTCGCGCTGTTCTCCAAGACCTGCAGAACGACAACTCCATTCAGGACTGGCGGGACACCAAGTCTTGGAAACTGCTTAAGCAGCTCGCCAATTCAGCTCAGCATAGGGCAGTTGTGAGAAAGATAGCACAACCCAAGAGTGTCCAAGGTGTTTTAGGAATGGACTTGGGAAAGGTCAAAGCAATACAGCACAGGATTGATGAATTCACCAATCGCATGTCAGAACTACTCTGTGTCGAAAGGGATGCTGAATTGGAGTTTACTCAGGAGGAATTGGATGCCGTTCCTAAACCAGATGATGTTTCTGATTCTTCAAAACCTCTTGATTTCTTGGTTAGTCATAGCCAGCCTCAACAAGAACACTGCGACACCATTTGTAATTTAAATGCCATCAGTACCTCTACAGGACTGGGGGGAATGCATTTGGTGTTATTCAAGGTTGAAGGGAACCACCGGTTACCACCTACTGCTCTTTCACCTGGAGACATGGTTTGTGTAAGAACATATGACAGCAGGGGTGCAATTACAACTTCTTGCATACAAGGATTTGTAAACAGTTTTGGAGATGATGGCTGTAGTATTACAATTGCTTTAGAGTCACGCCATGGTGACCCTACATTCTCTAAACTATTTGGGAAGAATGTGCGCATTGACCGTATTCAAGGACTGGCTGATACACTTACCTATGAGCGGAACTGTGAAGCTCTAATGCTGCTTCAGAAGAATGGTTTGCGTAAGAAGAATCCTTCGATTTCTGTTGTTGCTACTCTGTTTGGAGATGCGGAAGATGTTGCATGGCTAGAGAAGAATAATTTCGCCGACTGGGCAGAAGAAAAATCTGATAGAATTTTAGGAAGTGACAGCTTTGATGATTCTCAACGGAGAGCAATTGCGTTGGGTTTGAATAAAAAGAGGCCTGTGTTGGTTATCCAAGGCCCTCCCGGAACAGGCAAGACTGGTTTGCTCAAGCATCTTATAGCATGTGCTGTTCAGCAAGGTGAACGGGTTCTTGTTACAGCACCTACTAATGCAGCCGTAGATAACATGGTTGAAAAACTTTCAAATGTCAGATTAAATGTTGTGCGGGTTGGAAATCCAGCCCGGATATCAAAAACAGTGGGATCAAAGTCTTTGGAAGAAATTGTAAATGCTAAGCTTGCAAGTTTTCGAGAAGAGTATGAGAGGAAGAAGTCAGATCTAAGAAAAGATCTAAGACATTGTTTAAGGGATGATTCACTAGCTGCTGGCATACGTCAACTTCTGAAGCAGCTGGGAAGGTCACTGAAGAAAAAGGAAAAACAGATAGTAAATGAAGTTCTATCCAGTGCTCAGGTTGTGCTTGCCACAAATACTGGAGCAGCTGACCCTTTGATTCGAAGACTAGATACTTTTGACTTGGTCGTCATAGATGAAGCTGGACAGGCAATTGAACCCTCTTGTTGGATTCCTATATTGCAAGGTAAGCGGTGTATTCTTGCTGGTGATCAATGCCAACTTGCTCCTGTCATACTATCCAGAAAGGCCTTGGAAGGTGGTCTAAGAACATCTCTATTGGAAAGAGCTGCAACTTTGCATGAAGGGATTCTCACCACTAGGTTAACTACACAATATCGAATGAATGATGCTATTTCTAGTTGGGCTTCGAAGGAGATGTACGGAGGATTGTTGAAGTCCTCTGAGACTGTATCTTCTCATCTTCTTGTAGACTCTCCTTTCGTTAAGCCTACCTGGATAACACAATGCCCACTACTATTGTTAGATACCAGAATGCCATATGGAAGTCTGTCAGTTGGTTGCGAAGAGCATCTAGACCCAGCTGGAACAGGCTCACTTTATAATGAAGGAGAAGCTGAGATAGTTTTGCAGCATGTCTTTTCCTTAATTTATGCTGGTGTTAGCCCAGCTGCTATTGCCGTGCAATCCCCCTATGTTGCTCAAGTACAACTTTTGAGGGACAGGCTTGATGAGTTTCCCGAAGCCGCAGGCACAGAGGTTGCAACCATTGACAGTTTTCAAGGTCGGGAAGCTGATGCAGTAATTTTATCGATGGTTCGATCAAACACATTGGGAGCTGTTGGATTCCTCGGGGATAGCAGAAGAATCAACGTTGCCATCACAAGAGCACGCAAACATGTAGCTTTGGTCTGTGACAGCTCGACTATATGCCACAATACCTTCTTAGCAAGACTTCTTCGTCATATTAGACACTTTGGTAGGGTGAAGCATGCAGAGCCAGGTAGTTTTGGAGGATACGGACTTGGGATGAATCCAATATTACCTTCCATTAATTAG 2841 0.4576 METALTCFFCGRVPPTPKLGPAATATATPTHHFPCNNASTHLRSSFPPSFRLYRLIPNATNTSQPKVSTNSKTRRRRRRSCETQVVVEDAAAVHHNGDPIGKKDLGKSVTRWIRDSMRAMSSDLAAAEMQGEMELWERMGPGLTFIMQAQPYLNAVPMPIGLEGVCLKACTHYPTLFDHFQRELRAVLQDLQNDNSIQDWRDTKSWKLLKQLANSAQHRAVVRKIAQPKSVQGVLGMDLGKVKAIQHRIDEFTNRMSELLCVERDAELEFTQEELDAVPKPDDVSDSSKPLDFLVSHSQPQQEHCDTICNLNAISTSTGLGGMHLVLFKVEGNHRLPPTALSPGDMVCVRTYDSRGAITTSCIQGFVNSFGDDGCSITIALESRHGDPTFSKLFGKNVRIDRIQGLADTLTYERNCEALMLLQKNGLRKKNPSISVVATLFGDAEDVAWLEKNNFADWAEEKSDRILGSDSFDDSQRRAIALGLNKKRPVLVIQGPPGTGKTGLLKHLIACAVQQGERVLVTAPTNAAVDNMVEKLSNVRLNVVRVGNPARISKTVGSKSLEEIVNAKLASFREEYERKKSDLRKDLRHCLRDDSLAAGIRQLLKQLGRSLKKKEKQIVNEVLSSAQVVLATNTGAADPLIRRLDTFDLVVIDEAGQAIEPSCWIPILQGKRCILAGDQCQLAPVILSRKALEGGLRTSLLERAATLHEGILTTRLTTQYRMNDAISSWASKEMYGGLLKSSETVSSHLLVDSPFVKPTWITQCPLLLLDTRMPYGSLSVGCEEHLDPAGTGSLYNEGEAEIVLQHVFSLIYAGVSPAAIAVQSPYVAQVQLLRDRLDEFPEAAGTEVATIDSFQGREADAVILSMVRSNTLGAVGFLGDSRRINVAITRARKHVALVCDSSTICHNTFLARLLRHIRHFGRVKHAEPGSFGGYGLGMNPILPSIN 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00004 946 Pfam AAA domain 697 901 IPR041679 -
Viun7g00004 946 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 122 929 - -
Viun7g00004 946 FunFam DNA-binding protein SMUBP-2 isoform X2 275 406 - -
Viun7g00004 946 FunFam DNA helicase A 720 928 - -
Viun7g00004 946 CDD DEXXQc_SMUBP2 471 721 - -
Viun7g00004 946 SMART AAA_5 487 706 IPR003593 GO:0016887
Viun7g00004 946 Coils Coil 573 593 - -
Viun7g00004 946 SMART ultradead3 468 710 IPR014001 -
Viun7g00004 946 CDD SF1_C_Upf1 722 918 IPR047187 -
Viun7g00004 946 Gene3D - 299 406 - -
Viun7g00004 946 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 471 908 IPR027417 -
Viun7g00004 946 Gene3D - 720 928 IPR027417 -
Viun7g00004 946 Pfam AAA domain 472 688 IPR041677 GO:0004386
Viun7g00004 946 Gene3D - 407 704 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00004 Viun-Chr7 50819 60757 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00004 466 661 Core DNA Replication Machinery Family AT1G08840 26.768 2.89e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00004 - - gmx:100799347 1626.3