Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g03280 ATGGCTTCCGCTGCACCAGGTGCAACCAATGATGCTTTATACAAGGAATTGTGGCATGCCTGTGCTGGACCCCTTGTCACCCTTCCGCGTGAAGGGGAGAGAGTTTATTACTTCCCCCAAGGTCATATGGAACAGCTCGAGGCATCTATGAATCAGGGATTGGAGCAGCAAATGCCTTCCTTTAATCTGCCTTCTAAAATATTATGTAAAGTGGTCAATGTTCATCTTCGAGCTGAACCTGAAACAGATGAAGTATACGCACAAATAACTTTGCTTCCTGACGCAGATCAAAGTGAGGTGACAAGCCCTAACAATCCTCTACCAGAACCTCCAAGATGTAGTGTTCATTCATTTTGCAAGACTCTCACTGCATCTGACACTAGCACTCATGGAGGTTTCTCTGTTCTTCGAAGACATGCAGATGATTGTCTGCCACCACTGGATATGACGCAGCAGCCACCTTGGCAAGAATTGGTTGCAACTGATCTGCATGGCAATGAATGGCATTTTAGACATATTTTTCGAGGGCAACCCAGGCGCCACTTACTGACTACTGGGTGGAGTGTCTTTGTCAGTTCCAAAAAGTTAGTGGCTGGTGATGCATTTATATTCTTAAGGGGTGAAAATGGAGAGCTGCGTGTTGGAGTTAGGAGGCTCATGAGACAGCAAGGCAACATGCCATCTTCTGTTATATCTAGTCATAGTATGCATCTGGGTGTTCTTGCCACTGCATCTCATGCCATTGCCACAGGAACCTTGTTTTCTGTTTTTTACAAGCCCAGAACTAGCCGGTCTGAGTTTATTGTGAGTGTCAACAAGTATCTTGAAGCTCAAAGTCATAAACTTTCTGTTGGAATGAGATTCAAAATGAGATTTGAGGGTGATGAAGTTCCTGAAAGAAGGTTCAGTGGTACGATTGTGGGTGTCGGAGATAATAAATCGTCAGTCTGGACTAATTCTGAGTGGCGATCATTAAAGGTTCAATGGGATGAACCATCTTCTATTTTGCGTCCTGATAGAGTTTCTCCATGGGAATTGGAGCCACTTGTGTCTACCCCTCCCACAAATTCCCAGCCTTCCCAAAGAAACAAGAGATCACGGCCTCCCATTCTTCCTTCAATGGCTGATTCTTCTCTGCAAGGTGTACGGAAATCACCACTTGATTCTGCACCATTCTCTTATCGTGACCATCAACACGGACGAGACATCTATCCGTCAGCCAAATTCAATTCTACTGCAACTGGCTTCCTTGGTTTTGGTGGGAACTGTTCTGCTTCCAACAAATCAATATATTGGTCTAATAGGACAGAAAACTCTACAGAATCTTTTTCACCTGTAGCACTTAAAGAATCTGGAGAGAAGAGGCATGGGACTGCAAATGGCTGTAGGCTCTTTGGGATTCAGTTACTTGACAATTGTAATGGGGAAGAAAGCCTACCAATGGTCACTTTGTCAGGAAGGGTGGGTGATGATGGCCCTCTTCCATCTTTGGATGCTGAGTCTGACCAGCATTCCGAACCATCAAATATTAATCGATCTGATATTCCTTCGGTAAGTTGTGATGCCGAAAAATCATGCCTGCGGTCTCCCCAGGAGTCTCAGAGCAGGCAAATAAGAAGCTGCACAAAGGTTCACATGCAAGGTATGGCAGTTGGAAGGGCTGTGGATTTAACACGGTTTGATGGATATGAGGATCTGCTAAGGAAATTGGAAGAAATGTTTGACATCAAAGATGAACTCTGTGGATCCACAAAAAAATGGCAGGTTGTGTACACTGATAATGAAGACGATATGATGATGGTTGGGGATGACCCGTGGCTTGAGTTTTGTAGCATTGTGAGGAAAATTTTCATCTATACTGCTGAGGAGGTGAAGAAGCTTTCACCCAAAATGGGACTTCCAATCAATGAGGAAGTTAAACCCAGCAAAATGGACTCTGAAGCAGTTGTCAATCCTGAGGACCAGTCATCTATTGTGGGGTCCGGTTGTTAA 1992 0.4448 MASAAPGATNDALYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMNQGLEQQMPSFNLPSKILCKVVNVHLRAEPETDEVYAQITLLPDADQSEVTSPNNPLPEPPRCSVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMTQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQGNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEAQSHKLSVGMRFKMRFEGDEVPERRFSGTIVGVGDNKSSVWTNSEWRSLKVQWDEPSSILRPDRVSPWELEPLVSTPPTNSQPSQRNKRSRPPILPSMADSSLQGVRKSPLDSAPFSYRDHQHGRDIYPSAKFNSTATGFLGFGGNCSASNKSIYWSNRTENSTESFSPVALKESGEKRHGTANGCRLFGIQLLDNCNGEESLPMVTLSGRVGDDGPLPSLDAESDQHSEPSNINRSDIPSVSCDAEKSCLRSPQESQSRQIRSCTKVHMQGMAVGRAVDLTRFDGYEDLLRKLEEMFDIKDELCGSTKKWQVVYTDNEDDMMMVGDDPWLEFCSIVRKIFIYTAEEVKKLSPKMGLPINEEVKPSKMDSEAVVNPEDQSSIVGSGC 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g03280 663 ProSiteProfiles PB1 domain profile. 539 632 IPR000270 GO:0005515
Viun6g03280 663 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
Viun6g03280 663 MobiDBLite consensus disorder prediction 346 386 - -
Viun6g03280 663 MobiDBLite consensus disorder prediction 641 663 - -
Viun6g03280 663 MobiDBLite consensus disorder prediction 485 515 - -
Viun6g03280 663 Gene3D - 281 353 - -
Viun6g03280 663 FunFam Auxin response factor 116 220 - -
Viun6g03280 663 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 12 628 IPR044835 GO:0003677|GO:0006355|GO:0009725
Viun6g03280 663 Pfam AUX/IAA family 536 629 IPR033389 -
Viun6g03280 663 SUPERFAMILY CAD & PB1 domains 541 616 - -
Viun6g03280 663 Gene3D - 115 220 IPR015300 -
Viun6g03280 663 SMART B3_2 118 220 IPR003340 GO:0003677
Viun6g03280 663 SUPERFAMILY DNA-binding pseudobarrel domain 105 247 IPR015300 -
Viun6g03280 663 FunFam Auxin response factor 281 353 - -
Viun6g03280 663 MobiDBLite consensus disorder prediction 501 515 - -
Viun6g03280 663 Gene3D - 534 628 - -
Viun6g03280 663 Pfam B3 DNA binding domain 118 218 IPR003340 GO:0003677
Viun6g03280 663 MobiDBLite consensus disorder prediction 649 663 - -
Viun6g03280 663 CDD B3_DNA 116 218 IPR003340 GO:0003677
Viun6g03280 663 MobiDBLite consensus disorder prediction 349 367 - -
Viun6g03280 663 FunFam Auxin response factor 534 628 - -
Viun6g03280 663 Pfam Auxin response factor 244 326 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g03280 Viun-Chr6 34368451 34376090 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g03280 7 657 B3 DNA Binding Superfamily AT1G59750 72.036 0.0 942
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Viun6g03280 AUX_IAA 1.5e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g03280 K14486 - gmx:100793224 1275.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g03280 6 34368451 34376090 Viun6g03280 6 34368451 34376090 ECH