Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g03248 ATGGGTTGCATATGCTCCAAAGCAAAATCACCACCATCACACCAATACGTTTCCCAAAACCATACTGAAAGTTTGAAGGCCACTCCATCCCCCAACACCAACCATTTCGGAGACACCACTTCCCTAGTATCCAATTCAAATTCAAATTCAAATGCAACTCAAGAAAAAGCCTCCACCCCAATTCAACAGAAAGGAGACAAGAAAGCCAATGGGAATGGGGTGCAATCAACGACACAAACACAACAACCTAAGATGTCTAGGTTGTATAGTATAACCAGAGGGGAAAGAGGAGTACAGGTTCTCGCTGGATGGCCCTCTTGGCTGTCTGCAGTTGCCGGTGAAGCCATTAATGGCTGGATACCTCGTAGGGCTGATTCCTTTGAGAAGTTGGATAAGATTGGCCAAGGAACTTACAGCAGTGTTTATAAAGCTCGTGATCTTGAAACAAATACAATTGTTGCATTGAAGAAGGTTCGATTTACTAATATGGATCCAGAAAGCGTTTGTTTTATGTCAAGGGAGATTATTGTGTTGCGAAGGCTTGATCATCCCAATGTCATGAAGCTTGAGGGCATGATTGCCTCACGGGTCTCTGGTAGCTTGTACCTTATCTTTGAATATATGGAGCACGATCTTGCAGGACTTGCAGCAATACCTGACATCAAGTTTTCCGAAGCACAGATCAAGTGTTACATGCAACAGCTTCTTCGTGGTCTAGAACATTGTCACAGTCGTGGTGTCATGCATCGTGACATAAAAGGTTCAAATCTTCTGCTTGACGGTAATGGCAGACTAAAGATCGGTGATTTTGGGCTCGCAACTTTGCTTCAGCCATCTCAGGGGCAGCCTTTAACAAGTCGGGTAGTGACCTTGTGGTACAGGCCACCTGAACTTTTACTTGGAGCTACAGATTATGGAACTACTGTGGATTTGTGGAGTGCTGGATGTATTCTTGCAGAGTTGTTTGTAGGGAAGCCTATACTGTCTGGACGAACAGAGGTGGAGCAACTACATAAAATCTTCAAACTGTGTGGATCTCCTTCTGAAGAATACTGGAAGAAGTCAAAGTTACCGCATGCAACAATTTTTAAACCTCAACATCCTTACATACGCGTTGTTTCTCAGACATTCAAGGATTTTCCTTCATCTACACTGAGCCTCTTGGAGGTCCTTCTAGCTGTTGAATCGGATGATCGGGGAACTGCACCTTCAGCACTTCGGCATGAGTTCTTCACAACGATGCCACTTCCTTGTGATCCATCATCTTTACCAAAGTATCCACCGAGTAAGGAGTTTGATGCGAAACTTCGCGAAGAGGAAGCTAGAAGGCGAAGAGCACCAAATAAAGGACATGATTATGAATCACTTGGGAATAATTTAAGAGAGTCTACAGCTGTGCCAATACCTGGTGCTAATGCTGAGTTTCTGGCAACTATTGGGAAAGGACAGTGTAATTCTAAGCGGGTCTGTGAGAAGTACAATTACGAAAAGGATGAGGGTTATGGCTTCTCTCGCGAACCTGTAAAGTCAACGTCAACAGCACACAATGTACTTTCTCATTCTGGGCAGTCAATGCATCCAAGTGTTTATGGATCCTCACGCAATTTGAATTTGACAGAGGAAAATGTCCTAACATGCCCTGATCATGGCTTTATATCAAGAAAGTCTGAGTTGAGCAAACATACTTCCTATTGGCAAGGTAGCGTCGCAAAATTGTCAAGATTTTCTAATTCAATTGCAGTTCGTGGTGATTCACTGCTTGAAATGAGTGGTGGTGACTTTGGTGTGAATTCGCAGTTGCCAGAAGATCAATTTGGCAGGATATATAGCCATAAAGCAGATAGTGAGTCCAACCAATTGTTCGATGGACTCAAATCTTAA 1881 0.4343 MGCICSKAKSPPSHQYVSQNHTESLKATPSPNTNHFGDTTSLVSNSNSNSNATQEKASTPIQQKGDKKANGNGVQSTTQTQQPKMSRLYSITRGERGVQVLAGWPSWLSAVAGEAINGWIPRRADSFEKLDKIGQGTYSSVYKARDLETNTIVALKKVRFTNMDPESVCFMSREIIVLRRLDHPNVMKLEGMIASRVSGSLYLIFEYMEHDLAGLAAIPDIKFSEAQIKCYMQQLLRGLEHCHSRGVMHRDIKGSNLLLDGNGRLKIGDFGLATLLQPSQGQPLTSRVVTLWYRPPELLLGATDYGTTVDLWSAGCILAELFVGKPILSGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQHPYIRVVSQTFKDFPSSTLSLLEVLLAVESDDRGTAPSALRHEFFTTMPLPCDPSSLPKYPPSKEFDAKLREEEARRRRAPNKGHDYESLGNNLRESTAVPIPGANAEFLATIGKGQCNSKRVCEKYNYEKDEGYGFSREPVKSTSTAHNVLSHSGQSMHPSVYGSSRNLNLTEENVLTCPDHGFISRKSELSKHTSYWQGSVAKLSRFSNSIAVRGDSLLEMSGGDFGVNSQLPEDQFGRIYSHKADSESNQLFDGLKS 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g03248 626 FunFam probable serine/threonine-protein kinase At1g54610 210 451 - -
Viun6g03248 626 Gene3D Transferase(Phosphotransferase) domain 1 210 450 - -
Viun6g03248 626 Pfam Protein kinase domain 127 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g03248 626 FunFam probable serine/threonine-protein kinase At1g54610 114 209 - -
Viun6g03248 626 PANTHER CELL DIVISION PROTEIN KINASE 125 417 - -
Viun6g03248 626 ProSiteProfiles Protein kinase domain profile. 127 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g03248 626 MobiDBLite consensus disorder prediction 1 87 - -
Viun6g03248 626 Gene3D Phosphorylase Kinase; domain 1 114 209 - -
Viun6g03248 626 ProSitePatterns Protein kinases ATP-binding region signature. 133 156 IPR017441 GO:0005524
Viun6g03248 626 SMART serkin_6 127 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g03248 626 CDD STKc_CDK9_like 127 411 - -
Viun6g03248 626 MobiDBLite consensus disorder prediction 11 87 - -
Viun6g03248 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 247 259 IPR008271 GO:0004672|GO:0006468
Viun6g03248 626 SUPERFAMILY Protein kinase-like (PK-like) 120 419 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g03248 Viun-Chr6 34227833 34232623 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g03248 119 443 Core Cell Cycle Gene Families AT5G10270 49.118 1.80e-108 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Viun6g03248 Pkinase 2.4e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g03248 - - gmx:100805055 897.886