Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g03243 ATGTGGGTGGTGATGGCGGCGGCGGTAACTAGAAGAAGAGACGGTATGTGTGGCGTCCACCAATGGGCGTGGCCTAAACCCAGCAAATGGGTGAAGGGGAAACTGGTTGGATGTGGATCTTTCGGGACTGTGCATTTGGCGATGAACAAATCGACGGGTGGGCTTTTTGTGGTAAAGTCATCAAATTCGAGGGCAGGACGTGAGGCTTTGGACGAAGAGGTAAAAATCCTGAAAATAGTTAATTCATCGCCATACATTGTACAATGTTTAGGGACGGAGGAGGAGGAGGGGAAGTTGAATGTTTTTATGGAGTATATGGCAGGAGGTAGTTTGGCAGACGTGGCTCACAAGTTCGGTGGGTCATTGGATGAAGAGGTGGTTCGTGTGTATACCAGAGAAATTCTTCACGGCCTAAACCATCTTCACCTTCATGGAATTGTACACTGCGATCTGAAGTGCAAGAACGTGCTTTTGGACCCACAAGGCAACGTGAAGCTGGCGGATTTTGGATGTGCGAGAAGGGCAAACGAGTTGAGAAAGTCATTTGGTGGGACTCCTCTGTGGATGGCTCCTGAAGTGCTGAGGAACGAGTCTGTTGAGTTGTCTGCAGATATATGGTCCTTGGGTTGCACCGTTATTGAGATGGCTACCGGCAGGCCTCCATGGGCTAATCAGGTTTCAAATCACATCAGTGTTGTTCTCTGGATTGCCCATGGTGATGGGATTCCTCAGTTTCCACCACATTTCTCCGATGAGGGTTTGGATTTCTTGAGCATGTGCCTGCAGAGAGATCCCCGTAAGAGGCCTACCCCTCAACAGTTACTTTCCCATCCCTTTGTTACTCCCCAACATCATTATGCTTCCTCACCCGCAAGCGTCTTGGAGGTTCACGATTTCAAGGACTCTTGTGATGTTCATCACGATTTCTCTCTCACAGACACACTTCCTTCTTCTTTCACTGATTACTCCAAAGGAATAGCTGCTGTTTGTAAAGCGGAAGACAGTGCTTTGGGCTCATCGGGGAATTGGATTACAGTTAGATCAGGCTGA 1050 0.4857 MWVVMAAAVTRRRDGMCGVHQWAWPKPSKWVKGKLVGCGSFGTVHLAMNKSTGGLFVVKSSNSRAGREALDEEVKILKIVNSSPYIVQCLGTEEEEGKLNVFMEYMAGGSLADVAHKFGGSLDEEVVRVYTREILHGLNHLHLHGIVHCDLKCKNVLLDPQGNVKLADFGCARRANELRKSFGGTPLWMAPEVLRNESVELSADIWSLGCTVIEMATGRPPWANQVSNHISVVLWIAHGDGIPQFPPHFSDEGLDFLSMCLQRDPRKRPTPQQLLSHPFVTPQHHYASSPASVLEVHDFKDSCDVHHDFSLTDTLPSSFTDYSKGIAAVCKAEDSALGSSGNWITVRSG 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g03243 349 ProSiteProfiles Protein kinase domain profile. 30 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g03243 349 SUPERFAMILY Protein kinase-like (PK-like) 21 294 IPR011009 -
Viun6g03243 349 Pfam Protein kinase domain 32 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g03243 349 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Viun6g03243 349 CDD STKc_MAPKKK 29 280 - -
Viun6g03243 349 SMART serkin_6 30 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g03243 349 ProSitePatterns Protein kinases ATP-binding region signature. 36 59 IPR017441 GO:0005524
Viun6g03243 349 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 29 301 - -
Viun6g03243 349 Gene3D Transferase(Phosphotransferase) domain 1 27 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g03243 Viun-Chr6 34210943 34212525 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g03243 27 289 MAP Kinase Kinase Kinase AT1G54960 44.964 1.97e-71 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Viun6g03243 Pkinase 7.8e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g03243 - K20716 gmx:100798237 458.759