Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g03240 ATGTCAAGCATCAATACCAGCACTTTCACCAACCAACTACAAGAAAGCCATGATGAGGATGAAGAGCTTGGGTACAAGGAGTGTCGTCGCAACCATGCAGTGGCCCTTGGAGGAGCTTGCTACGATGGGTGCAATGAGTATCTGAAACCAAGTTCCGACCAAACCTCGGAGGACGCTTTCCTCTGTGCATGTTGTGGGTGTCACCGGAACTTCCACCGGAAACAGGATCCCGTGCAACAAGCTGAAGCAGAGAGTAATTATGTTATGGATGTAGTTCCTGTTTCAGCGAGGCCTACCAACAACAACCCAGAGGCAGTGCAGCGAGTAAGGCCACTAAGGAGGAAGAGGACGACCTTCTCGGTGGACCAGAAGAAGCAGATGACAAGGTTTGCTCATATTTTGGGGTGGAAACCTCACAAGGGTAACAGAGAGGAGATTCAACGTTTCTGCACTGACATGGGAATCAGCCGCAAGATCTTCGTCGTCTGGCTCAACAACAATCGTCACCGTGCAATCAACCACACAACTGATCCATCAACCAGTAATTAG 549 0.4973 MSSINTSTFTNQLQESHDEDEELGYKECRRNHAVALGGACYDGCNEYLKPSSDQTSEDAFLCACCGCHRNFHRKQDPVQQAEAESNYVMDVVPVSARPTNNNPEAVQRVRPLRRKRTTFSVDQKKQMTRFAHILGWKPHKGNREEIQRFCTDMGISRKIFVVWLNNNRHRAINHTTDPSTSN 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g03240 182 ProSiteProfiles 'Homeobox' domain profile. 110 174 IPR001356 GO:0003677
Viun6g03240 182 Gene3D - 98 173 - -
Viun6g03240 182 NCBIfam homeobox domain, ZF-HD class 113 168 IPR006455 -
Viun6g03240 182 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 25 75 IPR006456 -
Viun6g03240 182 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 25 75 IPR006456 -
Viun6g03240 182 SUPERFAMILY Homeodomain-like 106 170 IPR009057 -
Viun6g03240 182 Pfam ZF-HD protein dimerisation region 24 75 IPR006456 -
Viun6g03240 182 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 16 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g03240 Viun-Chr6 34177270 34178230 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g03240 25 169 ZF-HD Transcription Factor Family AT5G65410 33.898 1.70e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Viun6g03240 ZF-HD_dimer 9.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g03240 - - vra:106775003 291.582