Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g03238 ATGGAAGAGATTGAGTATGAAGAGGTTGTGAAAGCAACAGAAAACTTCAACCCCAGAAGGATCGTAGGGAAAGGAAGCCATGGGATGGTGTACAAAGGCATTGTTCAATTCAAAGAAAATAACAGTTTCAGGTTGGTCGCTGTAAAGAAGCCATCACAAGGCCTTCAATCTCTTCACGACAACTCAAAACTCGAAAATGAAATCCGAGTTCTGTCTTCTCTACCCGAAAACCCTCACGTGGTCAATCTTCTGGGAACCACGAGTGGTGAAGGTGATGATGATCACAGACACAGACTCATTGTGATGGAGTTCATGCCCAATGCCTCTCTGCATGACTTGCTTCATACCGATGAAAACCCACCCACGTGGCCCAAACGCGTTGAAATCGCCATGCAAATCGCTCGAGCGGTGCAGTTTCTTCACCAAGGTAAGCCTGTGGTGATTCACAGAGACATTAAACCCTCGAACATATTGTTTGATTCACGTTGGAATGCGAAGTTGGCAGATTTTGGACTCGCGGTGAGAGGGGTTGATCCGGTGAGTCGACCCGCTGGGACAATGGGGTACTTGGACCCGTGTTACACCACCCCAGATAAACTCAGCACCAAAAACGACATTTTCAGTTTTGGGGTTGTGTTGTTGGAGATCATAAGTGGTAGAAAGGCCATTGATGCCTGCAAAACACCGGCTTCAGTTGTTGAATGGGCGATTCAGTTAATGGATGAACAGCTTTTAAAAGAAATATGTGACGCAAGAGTGGCGGTGCCAGGTTACATGGTTGGAACAATCACTCGCCTGTTACGCTATGCTTCACGTTGCGTGTCAGAAAATGAAGATGAACGTCCTTCAGCTGGTGAAATTGTTATGGAAATGGAAAGTTGGTTGGCGAAACGAGTGAGGTTCCCCGTTTGGAGTCGCGTTTTGAAGGGGTTGGTTTGGTTGAGGAAGAGGAAACCGATGATGAGTATTGGTTGGCAAACTCAGACACGAATTCGGTGTATAGCAGAAGAAGAGGGCGAGGTAGAGGGTGTTGGTGTTGCAAGTGGGAAGATACCCATCACCATAAGGGAGGTTCTGGCGGATGCTACGTTGGAGTGA 1098 0.4727 MEEIEYEEVVKATENFNPRRIVGKGSHGMVYKGIVQFKENNSFRLVAVKKPSQGLQSLHDNSKLENEIRVLSSLPENPHVVNLLGTTSGEGDDDHRHRLIVMEFMPNASLHDLLHTDENPPTWPKRVEIAMQIARAVQFLHQGKPVVIHRDIKPSNILFDSRWNAKLADFGLAVRGVDPVSRPAGTMGYLDPCYTTPDKLSTKNDIFSFGVVLLEIISGRKAIDACKTPASVVEWAIQLMDEQLLKEICDARVAVPGYMVGTITRLLRYASRCVSENEDERPSAGEIVMEMESWLAKRVRFPVWSRVLKGLVWLRKRKPMMSIGWQTQTRIRCIAEEEGEVEGVGVASGKIPITIREVLADATLE 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g03238 365 PANTHER OS01G0253100 PROTEIN 3 293 - -
Viun6g03238 365 Pfam Protein kinase domain 19 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g03238 365 Gene3D Phosphorylase Kinase; domain 1 1 104 - -
Viun6g03238 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
Viun6g03238 365 FunFam Serine/threonine-protein kinase-like protein At5g23170 105 301 - -
Viun6g03238 365 ProSitePatterns Protein kinases ATP-binding region signature. 22 50 IPR017441 GO:0005524
Viun6g03238 365 SUPERFAMILY Protein kinase-like (PK-like) 5 296 IPR011009 -
Viun6g03238 365 SMART serkin_6 16 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g03238 365 ProSiteProfiles Protein kinase domain profile. 16 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g03238 365 Gene3D Transferase(Phosphotransferase) domain 1 105 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g03238 Viun-Chr6 34170581 34172362 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g03238 6 302 Receptor kinase-like Gene Family AT3G59420 39.739 6.61e-55 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Viun6g03238 Pkinase 2.2e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g03238 - - gmx:100305389 427.172