Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g03221 ATGGCTGTACATACAAAATTCCGTCTCATTACTTACTCACAGGAGATTGTTGATGGGCAGCCTATTTTTGTCTCTTCAAACTGCCTTCCTACCAAGGCTTTGAAATATGAACCTGCAGGTCATTCTTTCCATTCTGCTGCACTTAAACTTCGTGGTGTTCAGGAAGATAAGAATGAGGCTGAAGACAAGAAAGTGGCTGATGACAAGGAACAAACGTACCTTCCATCTGATTCTTACAGCAGTAAGAGCAAAAAGAAATCTGGTACTGGGGACAAGCAACAAGATCACTATGCATTATTGGGTCTGGGTCATCTAAGGTATCTGGCTACTGAGGATCAAATCCGTAAAAGCTATCGTGAAACTGCCTTGAGGTTTCATCCTGACAAACAGGCTGCTCTTCTTCTGGCCGAGGAAACTGAAGCCGCGAAACAAGCAAAGAAGGATGAAATAGAAAGTCACTTCAAGGCAATCCAGGAAGCATATGAAGTACTGATTGATCCTGTGAAGAGAAGGATTTATGATTCCACAGATGAGTTTGATGACGAGATTCCCACTGATTGTGCTCCACAGGATTTCTTTAAGGTGTTTGGTCCTGCTTTTATGAGGAACGGACGGTGGTCAGTTAATCAACCAATTCCAACACTAGGTGATGATAATACTCCATTAAAAGATGTAGATAATTTCTACAATTTTTGGTACTCCTTTAAAAGTTGGAGGGAGTTTCCTCATGCTGATGAGTTTGATCTCGAGCAAGCTGAATCTCGAGACCACAAGAGGTGGATGGAAAGGCAGAATGCAAAATTGACAGAAAAAGCTAGGAAAGAAGATTATGCACGGATTCGCACTCTTGTTGATAATGCTTATAAGAGGGACCCCAGAATATTGAGAAGAAAGGAAGAAGAAAAAGCTGAGAAACAGAGGAAAAAGGAGGCTAAGTTCCTGGCAAAGAAGTTGCAGGAAGAAGAAGCAGCCAGAATTGCAGAGGAAGAGAAGCAACGGAAAGAGGAGGAAGAGAGACAAGCTGCAGAAGCTGCTTTGCAACACAAGAAGGTGAAAGAGAAAGAGAAAAAGCTGTTGCGGAAGGAGCGAGCTCGCCTTCGAACTCTTTCAGGACCTATTGTATCCCAGCGTTTACTTGATATTTCTGATGATGATGTGGAAGGGCTTTGCATGTCACTTGATATTGAGCAGATGAGGAGTCTCTGTGAGAACATGGAAGGCATAAAGGTGTTATTAGAGCAAGCAAGTGTTTTGAGAGATGCGATGAGCTCCAAGAAAGAGGTGGCTGATGAGAAAACCAATCAACAAAATGCCAATGGTTCCATCAAGGCTAATGGCAGTGCTTCTCGAAGCAATGTTGAGAAGAAGGAGAAACCTTGGAGTAAAGAAGAGATTGATCTACTGAGGAAAGGAATGCAGAAATACCCCAAAGGAACTTCACGTAGGTGGGAGGTTATTTCAGAATACATTGGAACTGGAAGATCTGTTGAAGAAATAATGAAGGCAACTAAAACTGTACTCCTGCAGAAACCTGATTCATCAAAAGCTTTTGACACATTTCTTGAGAAAAGGAAACCTGGTGCACAATCAATTGAGTCTCCACTTTCAACCAGAGAAGAATTAGAAGGTGTATCAACTCCTGCCTCAACCAATAACACAGAAGACTCTCATAGCAAAAGTACAGATAATGAGAACTCTGCATCTACTAATGGAGTTTCTTCCAGTTCAGAACAGGATGTGTGGTCTGCAGTGCAGGAACGAGCACTGGTTCAAGCTTTAAAAGCCTTTCCAAAGGAAACAAGCCAGAGATGGGAGCGAGTTGCAACGGCAGTACCTGGGAAGACTGTGAATCAGTGTAAGAAAAAATTTACAATGATGAAGGAGAATTTCAGGAACAAGAAAAGTGCAGTCTAA 1914 0.4222 MAVHTKFRLITYSQEIVDGQPIFVSSNCLPTKALKYEPAGHSFHSAALKLRGVQEDKNEAEDKKVADDKEQTYLPSDSYSSKSKKKSGTGDKQQDHYALLGLGHLRYLATEDQIRKSYRETALRFHPDKQAALLLAEETEAAKQAKKDEIESHFKAIQEAYEVLIDPVKRRIYDSTDEFDDEIPTDCAPQDFFKVFGPAFMRNGRWSVNQPIPTLGDDNTPLKDVDNFYNFWYSFKSWREFPHADEFDLEQAESRDHKRWMERQNAKLTEKARKEDYARIRTLVDNAYKRDPRILRRKEEEKAEKQRKKEAKFLAKKLQEEEAARIAEEEKQRKEEEERQAAEAALQHKKVKEKEKKLLRKERARLRTLSGPIVSQRLLDISDDDVEGLCMSLDIEQMRSLCENMEGIKVLLEQASVLRDAMSSKKEVADEKTNQQNANGSIKANGSASRSNVEKKEKPWSKEEIDLLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEIMKATKTVLLQKPDSSKAFDTFLEKRKPGAQSIESPLSTREELEGVSTPASTNNTEDSHSKSTDNENSASTNGVSSSSEQDVWSAVQERALVQALKAFPKETSQRWERVATAVPGKTVNQCKKKFTMMKENFRNKKSAV 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g03221 637 Pfam Myb-like DNA-binding domain 458 499 IPR001005 -
Viun6g03221 637 Pfam Myb-like DNA-binding domain 580 626 IPR001005 -
Viun6g03221 637 Gene3D - 571 637 - -
Viun6g03221 637 Coils Coil 301 369 - -
Viun6g03221 637 CDD SANT 459 501 IPR001005 -
Viun6g03221 637 PRINTS DnaJ domain signature 149 169 IPR001623 -
Viun6g03221 637 PRINTS DnaJ domain signature 118 133 IPR001623 -
Viun6g03221 637 PRINTS DnaJ domain signature 48 66 IPR001623 -
Viun6g03221 637 MobiDBLite consensus disorder prediction 423 460 - -
Viun6g03221 637 MobiDBLite consensus disorder prediction 54 92 - -
Viun6g03221 637 Pfam DnaJ domain 95 174 IPR001623 -
Viun6g03221 637 SUPERFAMILY Chaperone J-domain 73 173 IPR036869 -
Viun6g03221 637 ProSiteProfiles Myb-like domain profile. 573 627 IPR001005 -
Viun6g03221 637 CDD DnaJ 95 166 IPR001623 -
Viun6g03221 637 MobiDBLite consensus disorder prediction 521 579 - -
Viun6g03221 637 SMART dnaj_3 94 169 IPR001623 -
Viun6g03221 637 CDD SANT 581 627 IPR001005 -
Viun6g03221 637 FunFam Myb family transcription factor 575 635 - -
Viun6g03221 637 ProSiteProfiles dnaJ domain profile. 95 177 IPR001623 -
Viun6g03221 637 SUPERFAMILY Homeodomain-like 453 501 IPR009057 -
Viun6g03221 637 MobiDBLite consensus disorder prediction 54 71 - -
Viun6g03221 637 SUPERFAMILY Homeodomain-like 579 634 IPR009057 -
Viun6g03221 637 SMART sant 577 629 IPR001005 -
Viun6g03221 637 SMART sant 456 509 IPR001005 -
Viun6g03221 637 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 1 636 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Viun6g03221 637 Gene3D DnaJ domain 78 187 IPR036869 -
Viun6g03221 637 ProSiteProfiles Myb-like domain profile. 452 507 IPR001005 -
Viun6g03221 637 MobiDBLite consensus disorder prediction 433 449 - -
Viun6g03221 637 ProSitePatterns Nt-dnaJ domain signature. 154 173 IPR018253 -
Viun6g03221 637 Gene3D - 452 510 - -
Viun6g03221 637 MobiDBLite consensus disorder prediction 530 579 - -
Viun6g03221 637 ProSiteProfiles SANT domain profile. 576 631 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g03221 Viun-Chr6 34053262 34057332 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g03221 96 295 C2H2 Transcription Factor Family AT1G74250 28.452 5.02e-18 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun6g03221 DnaJ 5e-17 CL0392