Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g03211 ATGGAGAAGTACGAGCTCGTCAAGGATATAGGATCTGGGAATTTTGGGGTGGCAAGGCTCATGCGGCACAAAGAAACCAAGGAACTTGTTGCCATGAAATACATTGAAAGGGGTCACAAGATTGATGAGAATGTTGCCAGGGAAATCATAAACCATAGAAGTCTTCGCCACCACAATATTATTCGCTTCAAGGAGGTGGTTTTGACTCCCACACATCTGGGTATTGTGATGGAGTATGCAGCTGGTGGAGAGCTCTTTGAGAGGATTTGCAGTGCTGGAAGATTCAGTGAAGACGAGGCTCGATATTTCTTCCAGCAGCTCATCTCAGGAGTTAGCTACTGTCATTCCATGCAAATCTGTCATCGAGACTTGAAGCTTGAGAACACCTTATTGGATGGCAGCCCTGCCCCACGGCTCAAAATTTGTGATTTTGGTTATTCTAAGTCATCCCTGCTTCATTCAAGGCCTAAGTCAACTGTGGGAACCCCAGCCTACATTGCGCCTGAGGTTCTTTCACGCAGAGAATATGATGGAAAGCTAGCCGATGTATGGTCCTGTGGAGTGACTCTTTATGTAATGTTGGTGGGAGCATACCCATTTGAAGACCAAGACGATCCCAAAAATTTCAGGAAAACCATCAATAGAATTATGGCTGTTCAATACAAGATCCCCGACTATGTTCACATATCTCAAGACTGCAGACATCTGCTATCTCGCATTTTTGTGGCAAATCCAGTTAGGAGAATTACCATTAAGGAAATCAAGTCCCACCCATGGTTTTTAAAGAACTTGCCTAGAGAATTAACAGAAGTAGCTCAAGCTGCCTACTACAGAAAAGAAAATCCAACCTTTTCTCTTCAGAGTATAGAAGACATCATGAATATTGTTGAGGAGGCCAAGATTCCACCTCCGGCATCCAGGTCAGTTGGAGGATTTGGTTGGGGAGGAGAAGAAGATGAGGATGAAACAAAAGAAGCAGAGGTTGAGGCTGAAGAAGATGAGTATGAAAAAAGAGTCAAAGAAGCACAGGCAAGCGGGGAATTTCATGTTAGTTAG 1056 0.4403 MEKYELVKDIGSGNFGVARLMRHKETKELVAMKYIERGHKIDENVAREIINHRSLRHHNIIRFKEVVLTPTHLGIVMEYAAGGELFERICSAGRFSEDEARYFFQQLISGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQDDPKNFRKTINRIMAVQYKIPDYVHISQDCRHLLSRIFVANPVRRITIKEIKSHPWFLKNLPRELTEVAQAAYYRKENPTFSLQSIEDIMNIVEEAKIPPPASRSVGGFGWGGEEDEDETKEAEVEAEEDEYEKRVKEAQASGEFHVS 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g03211 351 SUPERFAMILY Protein kinase-like (PK-like) 1 303 IPR011009 -
Viun6g03211 351 PANTHER SERINE/THREONINE KINASE 2 297 - -
Viun6g03211 351 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Viun6g03211 351 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Viun6g03211 351 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g03211 351 FunFam Serine/threonine-protein kinase SRK2E 1 79 - -
Viun6g03211 351 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g03211 351 FunFam Serine/threonine-protein kinase SRK2A 80 268 - -
Viun6g03211 351 CDD STKc_SnRK2 3 259 - -
Viun6g03211 351 MobiDBLite consensus disorder prediction 315 330 - -
Viun6g03211 351 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g03211 351 Coils Coil 325 345 - -
Viun6g03211 351 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Viun6g03211 351 Gene3D Transferase(Phosphotransferase) domain 1 80 268 - -
Viun6g03211 351 MobiDBLite consensus disorder prediction 304 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g03211 Viun-Chr6 34009246 34012383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g03211 3 263 CBL-interacting serine-threonine protein kinases AT4G24400 43.704 3.62e-67 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Viun6g03211 Pkinase 2.8e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g03211 K14498 - gmx:100812259 642.114