Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g03209 ATGAGACAAGGTGAAGCCAATTCAGTTCGGGCTGTTAAAGAGAATAACAGGGACTGGTTGCAGCATGCCAATGCTCATGAGAATTTCTCCTCCCAAGAGAAGTTTTTGAGCTCTAATTTTCTGTTCTCTCTTCCGCCTAAGAAGCCCCGCCACCGAGAACCGAACCCTGGGACTTCCGGGTTTGTATTTCAACGAAGTGAAAATATTCAAGTTTCACAGAGAGTACAATTTGACAAGGCTTGGGATGCTCTTTCAAGTCTACAAAATTCTAGTAGGAACTATGTACAACCTGGAAAATCTGTCAATGTTAATCAGCAGAGTCATGAGAATACGAGAACAGTACCCATCCACGGAGGCTATCAGAATGACAACCGTATGTGTCCTGATGTCACTGCCATTCCAGTTGTTAGCGGAAATACTTGGGGTTTGGATGGTTCATTGAACAATCATAATAAGTACACAGGCCAAATCAACGAGTCTTCTAACTGCATGTCTGGAGATATTGATGATGATAACATACTTGAGAACATTGATGTTGACCAAATAGTTGAGAAATACCAGTCGACCAGCACTCCCACGTCGTCAATATCCAAGTTTCCTCCTGTAACATCAAATGCACATAAAGATGAATGTGCTAGACAGGGGGATGATATTTTGCCACCAGACCTGTGTGTAGATTGCATCCATGGGTACAAGTTAGGGCTTTGCCCTGAAGCAGCAATTCATTTGCAGGGATTGAAGGATAATCTAATTGCAATCTCCAATGAACTGCTTGACAATGGTGAAAACCTCAATTCTACACAGTTAACAAAGCTTCGCCATGATAGGTCACAGCTGAATAAGCAAATTCAACAACTAGAAAAATATATTCAATCTGGTAATCTTAACGAGGAAAGGCAAAAGTCACATTTTTCTGCATCCACGGCACCATCTACATCATCTGTGTATGAAACACCTCAGCAAACTGGTGCCTGTAATGGATCCAAGCGATATGATACCCAGGCTTATATGGGTATCGGGACATGTGGTTCAACATTCCAGTCTCTTCCATCTTTTTCTTTAGACAATTATAGCATATCATCGGGTCCGGTGGAGCGGGAGGCGTTCATCCCAAAGATTATTGAAGTTAATTACATTGAAGGTTCTGGAGACAAACGCTGGAGCAGCCATGATTTTCCTTGGACAAAAGAGTTAGAGGTTAATAATAAAAAAGTATTTGGAAATCATTCCTTTCGCCCCAATCAAAGAGAGGTCATTAATGCCACAATGAGTGGATCTGATGTTTTTGTTCTGATGCCCACTGGTGGTGGAAAGAGTCTGACATATCAGTTACCGGCTCTTATTTGTCATGGTATAACATTAGTAATTTCTCCTCTTGTGTCCCTTATTCAGGATCAAATAATGCACTTACTGCAGGCAAATATACCAGCTGCTTACTTAAGTGCCAATATGGAATGGACTGAACAGCAGGAGATCCTCCGAGAACTTAATTCTGATTACTGTAAATACAAGTTATTATATGTGACACCTGAAAAGGTTGTCAAAAGTGATAATCTTTTGCGACACTTAGAGAATTTACATTTTCGTGAGTTACTTGCAAGGATTGTAATTGATGAGGCTCACTGTGTGAGCCAATGGGGGCATGATTTTAGACCAGACTATCAGGGACTTGGTATATTGAAACAGAAATTCCCGAATACTCCAGTTTTAGCTTTAACAGCTACAGCAACTGCTAGCGTAAAAGAAGATGTTGTGCAAGCACTTGGTCTTGTTAACTGCATTGTTTTTCGGCAAAGTTTTAATCGCCCAAACTTATGGTATTCTGTTGTCCCCAAGACCAAAAAGTGTTTGGAAGATATTGACAAATTCATTAGAGAGAATCATTTTGATGAATGTGGCATTATCTATTGTCTTTCGCGAATGGACTGTGAAAAGGTTGCTAGCAATTTGCAGGAATGTGGACATAAATGTGCATTTTATCATGGTAGCATGGATCCTGCTCAGCGTGCCTTTGTTCAACAGCAGTGGAGCAAAGATGAAATCAATATAATTTGTGCTACAGTAGCATTTGGAATGGGTATTAATAAACCCGATGTCCGATTTGTAATTCACCATTCTCTCCCAAAATCTATTGAAGGCTATCATCAGGAATGTGGCCGAGCTGGTAGAGATGGTCAACGTTCATCCTGTGTATTATATTATAACTATAGTGATTATATACGATTCAAGCTTATGTTAAGTCAAGGAGCAATAGAGCAAAGTCCCATGGTATCTGGACACAATCGTTCAAATATGATAAATCCTGGAAGCATACTAGAAACAAACACCGAAAACCTTATGCGAATGGTTAGTTATTGTGAAAATAATGTCGATTGTCGACGCCTTCTGCAGCTTGTTCATTTTGGGGAGAAGTTCAATTCTTCAACTTGTCATAAAACGTGTGATAATTGCTTGAAGATCACAAATTTTATTGAGAAGGATGTCACAGAGATAGCAAAGCAATTGGTTGAACTTGTTAAGCTAACGGGACAGAGGTTCTCATCATCTCATATATTAGAAGTCTATCGTGGTTCCTTTAGCCAAATGGTTAAGAAAAATCGGCATGAGAAAGTGAGCCTTCATGGTGCTGGAAAGCATCTAGCTAAGGGTGAGGCTTCCCGTATATTGCATCATCTTGTTGTCGAGGATATTCTTGTGGAAGAAGTAAAGAAAAGTGATTATTATGGATCGATATCGTCAATATTGAAGGTAAATGAGCTCAAGGTCTGTAATCTGTTTGCTGGGCACCGAATTATATTGAGATTTCCATCTTCTGTAAAGGCATTATTAAAACCAGGGAAATCTGATGCAACTCCAGCCAAGGGTTCTTTGACATCTGGGAAGCCGAATGTTATTCCAATTAACACTCCTCAGCCTCAAACCGAAGTGGATTTGAATCTTTCAGCCAAGTTATACACTGCTCTGCGTATGTTGAGGACAACTCTTGTCAAAGAAGCTGGAGATGGTGTTTTTGCTCACCACATATTTGGTAATGCCACGTTGCAGCATATGAGCAAGAGAGTGCCGAGAACCAAAGAAGAACTCCTCGATATCAATGGCATTGGCAAGGCAAAGGTAAGCAAGTATGGGGATGAGATACTGGAAACCATTGAGAATACCATAAATGAATATTACAAGTTGGATAAAGCCAGTAGCGACAGCAAAGGCAGTGCAGATTCTGGGAAAAGGAGACGAGAGTTTAATAATGCTGAGGACGATGACGCCCTCACCAATAGTACAGGTCGTTCTAAGAAAAGGACTATAAAGAAGCAAAATAGAAAAACTGTGATATATGATTCTGCAGAGGAAGATTATTTTCATGGATGCCATGACGAAGACCTAGACTTCGACCTCATAGAAATTGATGCATTAGATCAGGTGACTTGTAAAAATGCTTCTGGGGGAGCACTACCTCAATGGACAACATCTTGA 3471 0.4031 MRQGEANSVRAVKENNRDWLQHANAHENFSSQEKFLSSNFLFSLPPKKPRHREPNPGTSGFVFQRSENIQVSQRVQFDKAWDALSSLQNSSRNYVQPGKSVNVNQQSHENTRTVPIHGGYQNDNRMCPDVTAIPVVSGNTWGLDGSLNNHNKYTGQINESSNCMSGDIDDDNILENIDVDQIVEKYQSTSTPTSSISKFPPVTSNAHKDECARQGDDILPPDLCVDCIHGYKLGLCPEAAIHLQGLKDNLIAISNELLDNGENLNSTQLTKLRHDRSQLNKQIQQLEKYIQSGNLNEERQKSHFSASTAPSTSSVYETPQQTGACNGSKRYDTQAYMGIGTCGSTFQSLPSFSLDNYSISSGPVEREAFIPKIIEVNYIEGSGDKRWSSHDFPWTKELEVNNKKVFGNHSFRPNQREVINATMSGSDVFVLMPTGGGKSLTYQLPALICHGITLVISPLVSLIQDQIMHLLQANIPAAYLSANMEWTEQQEILRELNSDYCKYKLLYVTPEKVVKSDNLLRHLENLHFRELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIVFRQSFNRPNLWYSVVPKTKKCLEDIDKFIRENHFDECGIIYCLSRMDCEKVASNLQECGHKCAFYHGSMDPAQRAFVQQQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYNYSDYIRFKLMLSQGAIEQSPMVSGHNRSNMINPGSILETNTENLMRMVSYCENNVDCRRLLQLVHFGEKFNSSTCHKTCDNCLKITNFIEKDVTEIAKQLVELVKLTGQRFSSSHILEVYRGSFSQMVKKNRHEKVSLHGAGKHLAKGEASRILHHLVVEDILVEEVKKSDYYGSISSILKVNELKVCNLFAGHRIILRFPSSVKALLKPGKSDATPAKGSLTSGKPNVIPINTPQPQTEVDLNLSAKLYTALRMLRTTLVKEAGDGVFAHHIFGNATLQHMSKRVPRTKEELLDINGIGKAKVSKYGDEILETIENTINEYYKLDKASSDSKGSADSGKRRREFNNAEDDDALTNSTGRSKKRTIKKQNRKTVIYDSAEEDYFHGCHDEDLDFDLIEIDALDQVTCKNASGGALPQWTTS 1156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g03209 1156 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 419 594 IPR014001 -
Viun6g03209 1156 Pfam HRDC domain 982 1050 IPR002121 GO:0003676
Viun6g03209 1156 ProSiteProfiles HRDC domain profile. 978 1060 IPR002121 GO:0003676
Viun6g03209 1156 PANTHER DNA HELICASE RECQ FAMILY MEMBER 380 1068 - -
Viun6g03209 1156 CDD DEXHc_RecQ 402 601 - -
Viun6g03209 1156 MobiDBLite consensus disorder prediction 1063 1101 - -
Viun6g03209 1156 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 600 868 IPR027417 -
Viun6g03209 1156 Gene3D - 375 601 IPR027417 -
Viun6g03209 1156 SMART RQC_2 827 937 IPR018982 GO:0006260|GO:0006281|GO:0043138
Viun6g03209 1156 MobiDBLite consensus disorder prediction 1063 1093 - -
Viun6g03209 1156 MobiDBLite consensus disorder prediction 299 324 - -
Viun6g03209 1156 NCBIfam RecQ family ATP-dependent DNA helicase 403 878 IPR004589 GO:0004386|GO:0006310
Viun6g03209 1156 Pfam RecQ zinc-binding 768 818 IPR032284 -
Viun6g03209 1156 Coils Coil 269 289 - -
Viun6g03209 1156 CDD SF2_C_RecQ 602 734 - -
Viun6g03209 1156 FunFam Bloom syndrome, RecQ helicase 602 822 - -
Viun6g03209 1156 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 533 542 IPR002464 -
Viun6g03209 1156 Pfam Helicase conserved C-terminal domain 618 724 IPR001650 -
Viun6g03209 1156 SMART ultradead3 407 610 IPR014001 -
Viun6g03209 1156 Pfam RQC domain 824 936 IPR018982 GO:0006260|GO:0006281|GO:0043138
Viun6g03209 1156 FunFam ATP-dependent DNA helicase Q-like 4A 825 935 - -
Viun6g03209 1156 FunFam ATP-dependent DNA helicase RecQ 384 601 - -
Viun6g03209 1156 Pfam DEAD/DEAH box helicase 413 581 IPR011545 GO:0003676|GO:0005524
Viun6g03209 1156 SUPERFAMILY HRDC-like 981 1054 IPR010997 GO:0000166|GO:0044237
Viun6g03209 1156 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 386 742 IPR027417 -
Viun6g03209 1156 SMART helicmild6 644 725 IPR001650 -
Viun6g03209 1156 Gene3D - 825 934 IPR036388 -
Viun6g03209 1156 Gene3D - 602 820 IPR027417 -
Viun6g03209 1156 SMART hrdc7 978 1060 IPR002121 GO:0003676
Viun6g03209 1156 Gene3D HRDC domain 977 1065 IPR044876 -
Viun6g03209 1156 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 619 780 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g03209 Viun-Chr6 33993268 34000940 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g03209 634 738 Eukaryotic Initiation Factors Gene Family AT1G72730 22.857 9.08e-06 47.8