Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g03205 ATGGATTTGGCATCAACCATACCGTATGAGGCAATTGGGTATTTGTTCACTGGAGAACACAAACTGGGTCTTCCATACTTTCTCTTGGGCCTGCTTAGATTTTGGAGAATAAGACGAGTCAAGCAATTCTTCACAAGGCTTGAGAAAGACATCAGGTTCAGCTATTTCTGGGTCCGATGTGCTAGGCTTCTTTCTGTAACACTTTTTTCAATTCATTGTGCTGGATGTCTGTATTACATGCTAGCTGATCGTTACCCCCACAAAGGGAAGACATGGATTGGAGCTGTGAACCCAAACTTCAGAGAGACAAGCCTTCGAATCAGATACATTTCTGCCATGTACTGGTCCATCACTACCATGACCACTGTAGGTTATGGAGATCTTCATGCTGTCAACACCATGGAGATGATCTTCATCATTTTCTACATGCTCTTTAACCTTGGCCTAACTGCTTACTTGATCGGTAACATGACAAATCTTGTTGTTGAAGGAACTCGCCGTACCATGGAATTTAGAAATAGCATTGAGGCAGCATCAAACTTTGTATGCCGAAATCGGTTGCCTCCGAGGTTAAAAGAACAGATCTTGGCGTACATGTGTTTGAGATTCAAGGCAGAGAGTTTGAATCAGCATCAGCTTATTGAGCAGCTACCAAAGTCTATTTGCAAAAGCATCTGCCAGCATTTGTTTTTTGCAACCGTGGAGAAAGTCTATCTTTTCAAAGGCGTATCAAAAGAAATTATTCTGTCCCTGGTTGCAAAAATGAAGGCAGAGTACATACCTCCGAGAGAGGATGTTATCATGCAGAATGAAGCACCAGATGATATTTACATCATTGTGTCTGGAGAAGTTGAGATCATCGATAGTGTGATGGAGAAAGAGAAAACTTTAGGGACTCTGCATACTGGGGACATGTTTGGAGAGGTTGGTGCCCTTTGTTGTAGACCTCAGAGCTTCACCTACAGAACCAAGACTCTTACACAGCTCCTGAGACTGAAAACCAACACCCTACTAGAATCAATGCAGATTAAAAGAGAAGACAACATACAAATACTCAAAAATTTTCTTCAGCACTTCAAGCAGATTAAGAATCTGAGTATCAGAGATTTGATGGTGGAGAATGTGGAAGAAGAGGACCCTAACATGGCTGTGAACTTGTTAACTGTGGCTAGCACAGGCAATGCGGCTTTTCTTGAGGAGCTTCTGAGAGCAGGTTTGGATCCTGACATTGGAGACTCCGAAGGGAAAACTCCATTGCATATAGCAGCATCAAATGGACATGAAGAGTGTGTAAAAGTGTTACTAAAGCATACATGCAACATACATATAAAAGACATGAATGGTAACACTGCAATGTGGGATGCTATAGCATCAAAACATTACTCCATATTTCGACTTCTATTCCAGTTTGCTGCTCTCTCTGATCAGAACACAGCAGGTGATCTTCTGTGTACAGCCGCCAAAAAAAACGAATTAACAGTGATGGCAGATCTTTTGAAACAAGGATTAAACGTTGACTCTAAAGATCGTCATGATGCAACAGCAATCCAAATTGCTATGGCAGAAAAGCATGTGGAAATGGTTAAGTTACTTGTGATGAATGGTGCAGATGTATCTGATGTACATAATCATGAATTTTGTTCATCCACCTTCACTGAAATGCTGCATAATTGTGAAGTTGGACATCGAATTAATGTATTTGAGTTAATGCCTGATGAAGTTGCATCAAAGGGGAAACATCAAGAGGAGGAACATGTTGGAGAAAGGAGATATAATGGACCAAATATTGCAAGAGTAAGCATATATAGAGGTCACCCTGTAGTAAGAAGAGAAAAAGGTATCATGCAAGCTGGGAAACTAATAAGAATGCCTGATTCATTAGATGAACTCAAAACTATTGCAGGTGAAAAATTTGGGATTGATGCCAAAGATGCAATGGTGACAAATGAAGAAGGAGCAGAAATAGACTCCATTGATGTGATCAGAGATAATGATAAACTTTTTTTTGTTGACTAA 2016 0.4038 MDLASTIPYEAIGYLFTGEHKLGLPYFLLGLLRFWRIRRVKQFFTRLEKDIRFSYFWVRCARLLSVTLFSIHCAGCLYYMLADRYPHKGKTWIGAVNPNFRETSLRIRYISAMYWSITTMTTVGYGDLHAVNTMEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVCRNRLPPRLKEQILAYMCLRFKAESLNQHQLIEQLPKSICKSICQHLFFATVEKVYLFKGVSKEIILSLVAKMKAEYIPPREDVIMQNEAPDDIYIIVSGEVEIIDSVMEKEKTLGTLHTGDMFGEVGALCCRPQSFTYRTKTLTQLLRLKTNTLLESMQIKREDNIQILKNFLQHFKQIKNLSIRDLMVENVEEEDPNMAVNLLTVASTGNAAFLEELLRAGLDPDIGDSEGKTPLHIAASNGHEECVKVLLKHTCNIHIKDMNGNTAMWDAIASKHYSIFRLLFQFAALSDQNTAGDLLCTAAKKNELTVMADLLKQGLNVDSKDRHDATAIQIAMAEKHVEMVKLLVMNGADVSDVHNHEFCSSTFTEMLHNCEVGHRINVFELMPDEVASKGKHQEEEHVGERRYNGPNIARVSIYRGHPVVRREKGIMQAGKLIRMPDSLDELKTIAGEKFGIDAKDAMVTNEEGAEIDSIDVIRDNDKLFFVD 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g03205 671 ProSiteProfiles KHA domain profile. 598 671 IPR021789 -
Viun6g03205 671 SUPERFAMILY cAMP-binding domain-like 166 358 IPR018490 -
Viun6g03205 671 SUPERFAMILY Ankyrin repeat 345 545 IPR036770 -
Viun6g03205 671 FunFam Potassium channel KAT2 227 363 - -
Viun6g03205 671 PRINTS Ankyrin repeat signature 527 541 IPR002110 GO:0005515
Viun6g03205 671 PRINTS Ankyrin repeat signature 415 430 IPR002110 GO:0005515
Viun6g03205 671 ProSiteProfiles Ankyrin repeat profile. 511 543 IPR002110 GO:0005515
Viun6g03205 671 Pfam KHA, dimerisation domain of potassium ion channel 598 669 IPR021789 -
Viun6g03205 671 Pfam Cyclic nucleotide-binding domain 259 342 IPR000595 -
Viun6g03205 671 Gene3D - 1 162 - -
Viun6g03205 671 ProSiteProfiles Ankyrin repeat region circular profile. 414 445 - -
Viun6g03205 671 Pfam Ion transport protein 24 168 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Viun6g03205 671 Gene3D Jelly Rolls 206 381 IPR014710 -
Viun6g03205 671 CDD CAP_ED 239 352 IPR000595 -
Viun6g03205 671 ProSiteProfiles cAMP/cGMP binding motif profile. 239 358 IPR000595 -
Viun6g03205 671 PRINTS EAG/ELK/ERG potassium channel family signature 153 162 IPR003938 GO:0005249|GO:0006813|GO:0016020
Viun6g03205 671 PRINTS EAG/ELK/ERG potassium channel family signature 135 146 IPR003938 GO:0005249|GO:0006813|GO:0016020
Viun6g03205 671 PRINTS EAG/ELK/ERG potassium channel family signature 109 126 IPR003938 GO:0005249|GO:0006813|GO:0016020
Viun6g03205 671 ProSiteProfiles Ankyrin repeat region circular profile. 511 539 - -
Viun6g03205 671 Pfam Ankyrin repeats (3 copies) 390 469 IPR002110 GO:0005515
Viun6g03205 671 SMART cnmp_10 239 356 IPR000595 -
Viun6g03205 671 SUPERFAMILY Voltage-gated potassium channels 32 200 - -
Viun6g03205 671 Gene3D - 383 557 IPR036770 -
Viun6g03205 671 PANTHER POTASSIUM CHANNEL AKT1 1 670 IPR045319 GO:0005249|GO:0006813
Viun6g03205 671 SMART ANK_2a 381 410 IPR002110 GO:0005515
Viun6g03205 671 SMART ANK_2a 511 540 IPR002110 GO:0005515
Viun6g03205 671 SMART ANK_2a 447 478 IPR002110 GO:0005515
Viun6g03205 671 SMART ANK_2a 414 443 IPR002110 GO:0005515
Viun6g03205 671 ProSiteProfiles Ankyrin repeat profile. 414 446 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g03205 Viun-Chr6 33959851 33964172 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g03205 1 419 Ion Channels AT4G22200 75.887 0.0 674