Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g03204 ATGGAGGGGAACTTCAGTTCCTATAATCCTCAACTAGTAGCTTCTACCTTGAAGGAGAGTTACAGTAAGCAGGAGCATGATCATTCAGGGGAGGATCATCATCTCAAAGAAGAAGATTATATGTCTCCATCTTTCAATCTGAGGAATATTTCAAAGCTCATTCTTCCCCCACTGGGTGTTTCAAACCAGAATCCTGTTAACTCAAAAGGATGGATCATATCACCAATGGATTCCAGATACAGGTGTTGGGAGAGTTTTATGGTTCTTCTGGTAGCTTATTCTGCATGGGTTTATCCCTTCGAAGTTGCTTTCATGCACACATCTTCTAACATGAAAATCTATGTTGCGGACACTGTTGTTGATCTTTTCTTCGGTATTGACATTGTTTTGACATTCTTCTTGGCTTACATTGATCGAACAACTCATCTACTAGTTCGAGACAAGAAGAAGATTGTAGTAAGATACTTGTCTACATGGTTCGTGATGGATTTGGCATCAACCATACCGTATGAGGCAATTGGGTATTTGTTCACTGGAGAACACAAACTGGGTCTTCCATACTTTCTCTTGGGCCTGCTTAGATTTTGGAGAATAAGACGAGTCAAGCAATTCTTCACAAGGCTTGAGAAAGACATCAGGTTCAGCTATTTCTGGGTCCGATGTGCTAGGCTTCTTTCTGTAACACTTTTTTCAATTCATTGTGCTGGATGTCTGTATTACATGCTAGCTGATCGTTACCCCCACAAAGGGAAGACATGGATTGGAGCTGTGAACCCAAACTTCAGAGAGACAAGCCTTCGAATCAGATACATTTCTGCCATGTACTGGTCCATCACTACCATGACCACTGTAGGTTATGGAGATCTTCATGCTGTCAACACCATGGAGATGATCTTCATCATTTTCTACATGCTCTTTAACCTTGGCCTAACTGCTTACTTGATCGGTAACATGACAAATCTTGTTGTTGAAGGAACTCGCCGTACCATGGAATTTAGAAATAGCATTGAGGCAGCATCAAACTTTGTATGCCGAAATCGGTTGCCTCCGAGGTTAAAAGAACAGATCTTGGCGTACATGTGTTTGAGATTCAAGGCAGAGAGTTTGAATCAGCATCAGCTTATTGAGCAGCTACCAAAGTCTATTTGCAAAAGCATCTGCCAGCATTTGTTTTTTGCAACCGTGGAGAAAGTCTATCTTTTCAAAGGCGTATCAAAAGAAATTATTCTGTCCCTGGTTGCAAAAATGAAGGCAGAGTACATACCTCCGAGAGAGGATGTTATCATGCAGAATGAAGCACCAGATGATATTTACATCATTGTGTCTGGAGAAGTTGAGATCATCGATAGTGTGATGGAGAAAGAGAAAACTTTAGGGACTCTGCATACTGGGGACATGTTTGGAGAGGTTGGTGCCCTTTGTTGTAGACCTCAGAGCTTCACCTACAGAACCAAGACTCTTACACAGCTCCTGAGACTGAAAACCAACACCCTACTAGAATCAATGCAGATTAAAAGAGAAGACAACATACAAATACTCAAAAATTTTCTTCAGCACTTCAAGCAGATTAAGAATCTGAGTATCAGAGATTTGATGGTGGAGAATGTGGAAGAAGAGGACCCTAACATGGCTGTGAACTTGTTAACTGTGGCTAGCACAGGCAATGCGGCTTTTCTTGAGGAGCTTCTGAGAGCAGGTTTGGATCCTGACATTGGAGACTCCGAAGGGAAAACTCCATTGCATATAGCAGCATCAAATGGACATGAAGAGTGTGTAAAAGTGTTACTAAAGCATACATGCAACATACATATAAAAGACATGAATGGTAACACTGCAATGTGGGATGCTATAGCATCAAAACATTACTCCATATTTCGACTTCTATTCCAGTTTGCTGCTCTCTCTGATCAGAACACAGCAGGTGATCTTCTGTGTACAGCCGCCAAAAAAAACGAATTAACAGTGATGGCAGATCTTTTGAAACAAGGATTAAACGTTGACTCTAAAGATCGTCATGATGCAACAGCAATCCAAATTGCTATGGCAGAAAAGCATGTGGAAATGGTTAAGTTACTTGTGATGAATGGTGCAGATGTATCTGATGTACATAATCATGAATTTTGTTCATCCACCTTCACTGAAATGCTGCATAATTGTGAAGTTGGACATCGAATTAATGTATTTGAGTTAATGCCTGATGAAGTTGCATCAAAGGGGAAACATCAAGAGGAGGAACATGTTGGAGAAAGGAGATATAATGGACCAAATATTGCAAGAGTAAGCATATATAGAGGTCACCCTGTAGTAAGAAGAGAAAAAGGTATCATGCAAGCTGGGAAACTAATAAGAATGCCTGATTCATTAGATGAACTCAAAACTATTGCAGGTGAAAAATTTGGGATTGATGCCAAAGATGCAATGGTGACAAATGAAGAAGGAGCAGAAATAGACTCCATTGATGTGATCAGAGATAATGATAAACTTTTTTTTGTTGACTAA 2499 0.4026 MEGNFSSYNPQLVASTLKESYSKQEHDHSGEDHHLKEEDYMSPSFNLRNISKLILPPLGVSNQNPVNSKGWIISPMDSRYRCWESFMVLLVAYSAWVYPFEVAFMHTSSNMKIYVADTVVDLFFGIDIVLTFFLAYIDRTTHLLVRDKKKIVVRYLSTWFVMDLASTIPYEAIGYLFTGEHKLGLPYFLLGLLRFWRIRRVKQFFTRLEKDIRFSYFWVRCARLLSVTLFSIHCAGCLYYMLADRYPHKGKTWIGAVNPNFRETSLRIRYISAMYWSITTMTTVGYGDLHAVNTMEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVCRNRLPPRLKEQILAYMCLRFKAESLNQHQLIEQLPKSICKSICQHLFFATVEKVYLFKGVSKEIILSLVAKMKAEYIPPREDVIMQNEAPDDIYIIVSGEVEIIDSVMEKEKTLGTLHTGDMFGEVGALCCRPQSFTYRTKTLTQLLRLKTNTLLESMQIKREDNIQILKNFLQHFKQIKNLSIRDLMVENVEEEDPNMAVNLLTVASTGNAAFLEELLRAGLDPDIGDSEGKTPLHIAASNGHEECVKVLLKHTCNIHIKDMNGNTAMWDAIASKHYSIFRLLFQFAALSDQNTAGDLLCTAAKKNELTVMADLLKQGLNVDSKDRHDATAIQIAMAEKHVEMVKLLVMNGADVSDVHNHEFCSSTFTEMLHNCEVGHRINVFELMPDEVASKGKHQEEEHVGERRYNGPNIARVSIYRGHPVVRREKGIMQAGKLIRMPDSLDELKTIAGEKFGIDAKDAMVTNEEGAEIDSIDVIRDNDKLFFVD 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g03204 832 Gene3D Jelly Rolls 367 542 IPR014710 -
Viun6g03204 832 Pfam KHA, dimerisation domain of potassium ion channel 759 830 IPR021789 -
Viun6g03204 832 PRINTS Ankyrin repeat signature 576 591 IPR002110 GO:0005515
Viun6g03204 832 PRINTS Ankyrin repeat signature 688 702 IPR002110 GO:0005515
Viun6g03204 832 ProSiteProfiles KHA domain profile. 759 832 IPR021789 -
Viun6g03204 832 PANTHER POTASSIUM CHANNEL AKT1 47 831 IPR045319 GO:0005249|GO:0006813
Viun6g03204 832 SMART ANK_2a 608 639 IPR002110 GO:0005515
Viun6g03204 832 SMART ANK_2a 672 701 IPR002110 GO:0005515
Viun6g03204 832 SMART ANK_2a 575 604 IPR002110 GO:0005515
Viun6g03204 832 SMART ANK_2a 542 571 IPR002110 GO:0005515
Viun6g03204 832 ProSiteProfiles Ankyrin repeat region circular profile. 575 606 - -
Viun6g03204 832 Gene3D - 81 323 - -
Viun6g03204 832 PRINTS EAG/ELK/ERG potassium channel family signature 128 137 IPR003938 GO:0005249|GO:0006813|GO:0016020
Viun6g03204 832 PRINTS EAG/ELK/ERG potassium channel family signature 296 307 IPR003938 GO:0005249|GO:0006813|GO:0016020
Viun6g03204 832 PRINTS EAG/ELK/ERG potassium channel family signature 270 287 IPR003938 GO:0005249|GO:0006813|GO:0016020
Viun6g03204 832 PRINTS EAG/ELK/ERG potassium channel family signature 117 127 IPR003938 GO:0005249|GO:0006813|GO:0016020
Viun6g03204 832 PRINTS EAG/ELK/ERG potassium channel family signature 314 323 IPR003938 GO:0005249|GO:0006813|GO:0016020
Viun6g03204 832 Pfam Ankyrin repeats (3 copies) 551 630 IPR002110 GO:0005515
Viun6g03204 832 SUPERFAMILY Ankyrin repeat 506 705 IPR036770 -
Viun6g03204 832 ProSiteProfiles Ankyrin repeat profile. 575 607 IPR002110 GO:0005515
Viun6g03204 832 ProSiteProfiles cAMP/cGMP binding motif profile. 400 519 IPR000595 -
Viun6g03204 832 Pfam Cyclic nucleotide-binding domain 420 503 IPR000595 -
Viun6g03204 832 ProSiteProfiles Ankyrin repeat profile. 672 704 IPR002110 GO:0005515
Viun6g03204 832 Pfam Ion transport protein 81 329 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Viun6g03204 832 Gene3D - 544 717 IPR036770 -
Viun6g03204 832 SMART cnmp_10 400 517 IPR000595 -
Viun6g03204 832 FunFam Potassium channel KAT2 388 524 - -
Viun6g03204 832 ProSiteProfiles Ankyrin repeat region circular profile. 672 700 - -
Viun6g03204 832 SUPERFAMILY cAMP-binding domain-like 327 519 IPR018490 -
Viun6g03204 832 FunFam Potassium channel KAT3 82 324 - -
Viun6g03204 832 SUPERFAMILY Voltage-gated potassium channels 75 323 - -
Viun6g03204 832 CDD CAP_ED 400 513 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g03204 Viun-Chr6 33958976 33964172 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g03204 23 580 Ion Channels AT4G22200 72.872 0.0 862
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g03204 K21867 - gmx:100798422 1474.91