Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g03192 ATGGGAAGAAACGGAGGTGGAAGGTCTCTGCAACAAGCCCTCCGTCGCCGTATTGAGACCTGCAAGTCCAAGTACTCCACTGCCGAGGAAATCGCCAACCATCTCCGTTCAACTTACCCCGATTACCACCGCACCAAACACCAAACCCTAATTCGATTTGTCCAGGAAGCGGTTCATTCCACCGCTAAGCTGAATCACACTCCCACGCCCAAGTATTCGGATGGTGACGATGACGACAACATAGAATCCCGAAGCGCGTCTCGAAAGCGTAGGAAGAAAATCGACGAGGGTGAAGAGAAGCTGAAGAAGATGGAAGCGTTACACGTGCGAAGGAGGGTGCCGAATCCTTCCTCGTCGTCCTCTGCTTCTTCGGAGAGTGATGACGAGGAAACGGTGTCGACTTCGGAGGACGCAATTTACGGGGAAAAGGTGGAACCTCAGTTTGATTTGATGAAGGAAATGCTGAGGAAGTCATATACGCCGAAGAAGAAGGCGGCGGCGGAGGAAAAAAACGTTGAAATGGAGATGAGTAGTAGACCTAAAGACACTGTTCTGAATGAGGCGACTGAGGTGAGGAAGCAATCTATGCGTTCGGTTTCAAACGGTGGTGAGGTTTCAAATGGTGAGGTGAAGAGGAAGGATGGGCCGAGATTTAAGGATTTGGGTGGGATGAAGGAAGTTTTGGAGGAACTGAAGATGGAAGTGATTGTACCTTTGTTTCATCCCCAAATTCCTAGACAGTTAGGAGTGAAGCCAATGGCTGGAATTTTGTTGCATGGTCCACCTGGATGTGGGAAGACCCGACTTGCTCATGCTATAGCTAATGAGACTGGTCTTCCTTTCTATAAGATTTCAGCTACTGAGGTTGTCTCTGGAGTCTCAGGTGCATCTGAAGAAAATATTAGAGAACTATTTGCTAAAGCTTACCGAAGTGCACCTTCAATTGTCTTTATTGATGAGATTGATGCAATTGCATCTAAAAGAGAGAATTTGCAACGGGAGATGGAGAAGCGAATTGTGACGCAATTATTGACTTGCATGGATCAATCAAATAGGCTCCTTCAACCAGATGATTCAGAGAGCGCTGGCTATGTTCTTGTAATAGGAGCTACAAATAGGCCTGATGCCATTGACCCTGCCTTGAGAAGGCCAGGTCGATTTGATCGTGAAATTATCATTTGCCATCCTGATGAATCTGCTAGGGAGGAGATCCTATCTGTTCTTACTTCCAATCTTAGACTTGAGGGTTTATTTGATCTACAGAGAATAGCCAGGGCTACATCAGGATTTGTTGGTGCTGATTTGGCTGCTCTGGTTGATAAAGCTGGTAATCTGGCAATGAAGAGAATAATTGACGAAAGGAGACGTGAATTATCTCAAGAACTCAGGAGTGAGCATGAAGACTGGTGGAGGGAACCTTGGTCCAGTGAAGAAATAGATAAGCTTGCCATCAAAATGTCTGATTTTGAGGAAGCATCAAAGAAGATACAACCTTCATTAAGAAGGGAAGGATTCTCCATGATTCCCGATGTAAAATGGGAAGATGTTGGCGGCCTTGACATGTTAAGAAAGGAGTTTGAACGGTATATTGTAAGACGCATAAAATATCCTGAAGATTATGAGAGGCTTGGGGTTGATCTGGAGACTGGATTTTTGCTTTACGGACCTCCGGGTTGTGGTAAAACGCTGATTGCCAAGGCGGTTGCTAGTGAGGCAGGAGCTAGTTTTATACATATTAAGGGTCCCGAACTTTTAAATAAATATGTTGGAGAGAGTGAACTCGCAGTTCGAACATTGTTTAGCCGTGCAAGGACATGTGCACCATGTATACTCTTCTTTGATGAGGTTGATGCTTTGACAACAAAACGTGGTAAGGAAGGTGGCTGGGTTATTGAACGACTGTTGAACCAGTTGCTTATTGAGTTGGATGGCGCAGGGCATCGGCGTGGTGTTTTCGTGATTGGTGCCACAAATAGGCCTGAGGTGATGGATCGTGCTCTCTTACGGCCGGGTAGATTTGGTAAACTTCTTTACGTTCCACTCCCCGACCTTGATGAGCGAGTTTTGATATTGAAAGCTCTTGCAAGGACTAAGGCAATTGATGCCGATGTAGATTTGAGTGTGATTGCAAGAATGAAAGGTTGTGAAAATCTAAGCGGAGCTGATCTTGCTGCACTGATTAATGAAGCAGCAATGGCTGCTGTTGAAGAGAAAGATACAACTATTAAGAGTATTCATTTTGAGATGGCACTAAGTAAAGTCTCGCCCTCAGTATCTGACCGGCAAAAGCAGTACTATCAGCACTTGTCGGAGAGCTTTAAAGTAGCTTTAAAGTAG 2337 0.4527 MGRNGGGRSLQQALRRRIETCKSKYSTAEEIANHLRSTYPDYHRTKHQTLIRFVQEAVHSTAKLNHTPTPKYSDGDDDDNIESRSASRKRRKKIDEGEEKLKKMEALHVRRRVPNPSSSSSASSESDDEETVSTSEDAIYGEKVEPQFDLMKEMLRKSYTPKKKAAAEEKNVEMEMSSRPKDTVLNEATEVRKQSMRSVSNGGEVSNGEVKRKDGPRFKDLGGMKEVLEELKMEVIVPLFHPQIPRQLGVKPMAGILLHGPPGCGKTRLAHAIANETGLPFYKISATEVVSGVSGASEENIRELFAKAYRSAPSIVFIDEIDAIASKRENLQREMEKRIVTQLLTCMDQSNRLLQPDDSESAGYVLVIGATNRPDAIDPALRRPGRFDREIIICHPDESAREEILSVLTSNLRLEGLFDLQRIARATSGFVGADLAALVDKAGNLAMKRIIDERRRELSQELRSEHEDWWREPWSSEEIDKLAIKMSDFEEASKKIQPSLRREGFSMIPDVKWEDVGGLDMLRKEFERYIVRRIKYPEDYERLGVDLETGFLLYGPPGCGKTLIAKAVASEAGASFIHIKGPELLNKYVGESELAVRTLFSRARTCAPCILFFDEVDALTTKRGKEGGWVIERLLNQLLIELDGAGHRRGVFVIGATNRPEVMDRALLRPGRFGKLLYVPLPDLDERVLILKALARTKAIDADVDLSVIARMKGCENLSGADLAALINEAAMAAVEEKDTTIKSIHFEMALSKVSPSVSDRQKQYYQHLSESFKVALK 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g03192 778 Gene3D - 509 766 IPR027417 -
Viun6g03192 778 Pfam AAA+ lid domain 418 453 IPR041569 -
Viun6g03192 778 Pfam AAA+ lid domain 703 748 IPR041569 -
Viun6g03192 778 PANTHER AAA-FAMILY ATPASE 65 774 - -
Viun6g03192 778 ProSitePatterns AAA-protein family signature. 651 669 IPR003960 GO:0005524|GO:0016887
Viun6g03192 778 FunFam Cell division control protein 48 homolog C 396 503 - -
Viun6g03192 778 Gene3D - 396 503 - -
Viun6g03192 778 MobiDBLite consensus disorder prediction 70 110 - -
Viun6g03192 778 Gene3D - 204 393 IPR027417 -
Viun6g03192 778 FunFam Ribosome biogenesis ATPase RIX7 206 394 - -
Viun6g03192 778 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 217 503 IPR027417 -
Viun6g03192 778 Pfam ATPase family associated with various cellular activities (AAA) 552 680 IPR003959 GO:0005524|GO:0016887
Viun6g03192 778 Pfam ATPase family associated with various cellular activities (AAA) 256 393 IPR003959 GO:0005524|GO:0016887
Viun6g03192 778 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 509 772 IPR027417 -
Viun6g03192 778 MobiDBLite consensus disorder prediction 62 136 - -
Viun6g03192 778 SMART AAA_5 547 683 IPR003593 GO:0016887
Viun6g03192 778 SMART AAA_5 252 397 IPR003593 GO:0016887
Viun6g03192 778 MobiDBLite consensus disorder prediction 191 205 - -
Viun6g03192 778 Gene3D - 682 752 - -
Viun6g03192 778 MobiDBLite consensus disorder prediction 113 128 - -
Viun6g03192 778 MobiDBLite consensus disorder prediction 191 217 - -
Viun6g03192 778 FunFam ATPase, AAA family protein 509 689 - -
Viun6g03192 778 ProSitePatterns AAA-protein family signature. 365 383 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g03192 Viun-Chr6 33879113 33883834 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g03192 482 774 Calmodulin-binding Proteins AT3G56690 44.781 2.99e-69 244