Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g03165 ATGTCTCTAACAGGTCGTTCTCGCATCGTCGTGAATGGGGTCAGAAGAACGAGAACTTTTCACTATTTCTGGTGCCTGTATTGCCAAAGAACCGTGAGGATACCCTTTACAAACAATAATGGTTCTACATGCCCCTATTGCTTCCACCACCTGCGTTATGAGCTTGATATCTCAAGGCCAAGGCTTCTCATGAACGTGCCAAATAACTTGGAACCTTCACCAGCTACTCAACTTCTGCATAACTTGGCCCTCATTCTTGATCCACCTCTAAGGAGGCAAAACAACATCCACTTAAACACAACCACACACTGGGAAACAGAAAATACAGAAAATGAAGATGGTGCAGATCCTCAGGCTTGGGTTACACTCCGATTTCCAAGGCCAACTCGTGCACCTAGGCCTATTTCCCCACCACAGAACTTGGTTCCTCCGAGCAACCACACTGAGACATTATTAGATGACTTCATCGATGGGGTGATTCAGAATAATACTCGACCAGGGCCACCTCCTGCAGCATCTTCTGCCATTGCAGCATTGCCGGTGGTGAAACTGACGCAAACCCATTTGGGTAGTGACCCCAATTGCCCAATTTGCAAAGACGAGTTTGAGCTTGAAATGGAAGTCAGAGAGTTGCCATGCAAACATTTCTACCATTCTGACTGCATCACCCCATGGTTGCGCATGCACAACACTTGCCCTGTGTGCCGCTTCGAGCTGCAAGGAGTTGTTACTCCTGATGCTAATTATCATTACCGTTTCCAAGTTGATGAGAATGACATGAGGTTTGCGTTTGAGGATATCTCAAACAGTTTGAACTGGATTTGGAACCAGTTGGCTTCATTCAGACCTATTCGTTCAGTCCTAGATTGGACACGGTCCTACTTTGATTTCCATGAAACTCGTCTTCGTGCTCGTCGAGGAACTGCAGGTAGTTCTTGGTGGCGATCATTGTTCGTTATATAG 963 0.4642 MSLTGRSRIVVNGVRRTRTFHYFWCLYCQRTVRIPFTNNNGSTCPYCFHHLRYELDISRPRLLMNVPNNLEPSPATQLLHNLALILDPPLRRQNNIHLNTTTHWETENTENEDGADPQAWVTLRFPRPTRAPRPISPPQNLVPPSNHTETLLDDFIDGVIQNNTRPGPPPAASSAIAALPVVKLTQTHLGSDPNCPICKDEFELEMEVRELPCKHFYHSDCITPWLRMHNTCPVCRFELQGVVTPDANYHYRFQVDENDMRFAFEDISNSLNWIWNQLASFRPIRSVLDWTRSYFDFHETRLRARRGTAGSSWWRSLFVI 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g03165 320 FunFam E3 ubiquitin-protein ligase RING1-like 159 242 - -
Viun6g03165 320 SUPERFAMILY RING/U-box 176 240 - -
Viun6g03165 320 SMART ring_2 195 235 IPR001841 -
Viun6g03165 320 Pfam Ring finger domain 194 236 IPR001841 -
Viun6g03165 320 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 107 239 - -
Viun6g03165 320 ProSiteProfiles Zinc finger RING-type profile. 195 236 IPR001841 -
Viun6g03165 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 242 IPR013083 -
Viun6g03165 320 CDD RING-H2_RNF126-like 194 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g03165 Viun-Chr6 33780157 33781502 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g03165 1 300 C3H Transcription Factor Family AT1G68180 30.719 2.98e-39 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g03165 K11982 - gmx:100793656 463.381