Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g03164 ATGTCTCTAACAGGTCGTTCTCGCATCGTCGTGAATGGGGTCAGAAGAACGAGAACTTTTCACTATTTCTGGTGCCTGTATTGCCAAAGAACCGTGAGGATACCCTTTACAAACAATAATGGTTCTACATGCCCCTATTGCTTCCACCACCTGCGTTATGAGCTTGATATCTCAAGGCCAAGGCTTCTCATGAACGTGCCAAATAACTTGGAACCTTCACCAGCTACTCAACTTCTGCATAACTTGGCCCTCATTCTTGATCCACCTCTAAGGAGGCAAAACAACATCCACTTAAACACAACCACACACTGGGAAACAGAAAATACAGAAAATGAAGATGGTGCAGATCCTCAGGCTTGGGTTACACTCCGATTTCCAAGGCCAACTCGTGCACCTAGGCCTATTTCCCCACCACAGAACTTGGTTCCTCCGAGCAACCACACTGAGACATTATTAGATGACTTCATCGATGGGGTGATTCAGAATAATACTCGACCAGGGCCACCTCCTGCAGCATCTTCTGCCATTGCAGCATTGCCGGTGGTGAAACTGACGCAAACCCATTTGGGTAGTGACCCCAATTGCCCAATTTGCAAAGACGAGTTTGAGCTTGAAATGGAAGTCAGAGAGTTGCCATGCAAACATTTCTACCATTCTGACTGCATCACCCCATGGTTGCGCATGCACAACACTTGCCCTGTGTGCCGCTTCGAGCTGCAAGGAGTTGTTACTCCTGATGCTAATTATCATTACCGTTTCCAAGTTGATGAGAATGACATGAGGTTTGCGTTTGAGGATATCTCAAACAGTTTGAACTGGATTTGGAACCAGTTGGCTTCATTCAGACCTATTCGTTCAGTCCTAGATTGGACACGGTCCTACTTTGATTTCCATGAAACTCGTCTTCGTGCTCGTCGAGGTAGTTCTTGGTGGCGATCATTGTTCGTTATATAG 954 0.4633 MSLTGRSRIVVNGVRRTRTFHYFWCLYCQRTVRIPFTNNNGSTCPYCFHHLRYELDISRPRLLMNVPNNLEPSPATQLLHNLALILDPPLRRQNNIHLNTTTHWETENTENEDGADPQAWVTLRFPRPTRAPRPISPPQNLVPPSNHTETLLDDFIDGVIQNNTRPGPPPAASSAIAALPVVKLTQTHLGSDPNCPICKDEFELEMEVRELPCKHFYHSDCITPWLRMHNTCPVCRFELQGVVTPDANYHYRFQVDENDMRFAFEDISNSLNWIWNQLASFRPIRSVLDWTRSYFDFHETRLRARRGSSWWRSLFVI 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g03164 317 FunFam E3 ubiquitin-protein ligase RING1-like 159 242 - -
Viun6g03164 317 SUPERFAMILY RING/U-box 176 240 - -
Viun6g03164 317 SMART ring_2 195 235 IPR001841 -
Viun6g03164 317 ProSiteProfiles Zinc finger RING-type profile. 195 236 IPR001841 -
Viun6g03164 317 Pfam Ring finger domain 194 236 IPR001841 -
Viun6g03164 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 242 IPR013083 -
Viun6g03164 317 CDD RING-H2_RNF126-like 194 236 - -
Viun6g03164 317 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 107 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g03164 Viun-Chr6 33780157 33781502 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g03164 1 300 C3H Transcription Factor Family AT1G68180 30.719 2.54e-39 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g03164 K11982 - gmx:100793656 468.774