Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g03146 ATGGATAATGCAATTAGAAGAATCGATGCTGCTATTCAAAGTAGCAGTGATTCAATTTTGGGAAAAGGAGAATACCGCGTCCCTGGATTTGATTCGACAGTGAACAGTGCCATAAGGAGTAGAACTTCGTCAAATTCGAAAATATTTTCTGTCAATGGATTCGGTTGGACAGTGGAGAATGCCATCAAGAGTACCACTGCACCAAATTTTCAAACACACGATAGTGTTCATAGTTTTGGTTGGGCGGTTGAGAATGCAATGAGGAGTGGGGTTGGGCCAAATCCCCCTCCTTTCCACGGTTTCACTTCGGCGGTGGATAAAGCAATTTGCAGCAAAGTTGGTGCCGAAGCCGAAGTTGAAGGCGAAACCGAAGAGTTGCCCAACAGAGAGGGGTACGCGGTGTCATGGCAGAAGGGCTACATGTTAGGGAAGGGCTCCTTCGGCACCGTCTACGAAGCCTTCACAGATGATGGAAACTTTTTTGCTGTAAAGGAGGTGTCCTTGTTGGATCATAGAAGCCAGGGCAAACAGAGCATTTTCCAACTTCGGCAGGAAATATCTCTTTTGAGTCAGTTCCGGCATGACAACATAGTTCAATATCTAGGCACAGACAAGGATAATGATAAACTGTATATCTTCCTCGAGATTGTAACAAAAGGATCATTGGCAGTTCTCTATAAAAAGTATCATTTAATGGACTCTCAAGTTTCTGCATATACAAGGCAAATTTTAAGCGGCTTGAAGTATCTTCATGATCGTAATGTGGTTCACAGGGACATCAAGTGTGCCAATATACTGGTTGATGCAACCGGGTCCGTCAAGCTTGCAGATTTTGGTTTGGCAAAGGTTACCAAATTAAACGATGTTAAATCAATTGGAGGCTCCCTGAACTGGATGGCCCCTGAGGTTGTTAACTTGAGGAGTGGTGGATATGGGTTAGCAGCAGATATATGGAGCTTAGGATGCACAGTGTTAGAGATGTTGACTCGTCAACCTCCTTACTACCATTTGGAAGAAATGCAAGTGATATTTCAAATCGGCGGTGGTGAACCTCCACCTGTTCCGGGATCGCTGTCGATAAATGCCCGAGATTTCATTCTTAAATGCTTACAAGCTGATCCAAACAAACGTCCAACTGTTGCTCAACTATTGGACCATCCATTTGTAAACTTTTGCACCACTGTTAATTATGGAGACCAATTTCAAGTACCACATTGA 1218 0.4368 MDNAIRRIDAAIQSSSDSILGKGEYRVPGFDSTVNSAIRSRTSSNSKIFSVNGFGWTVENAIKSTTAPNFQTHDSVHSFGWAVENAMRSGVGPNPPPFHGFTSAVDKAICSKVGAEAEVEGETEELPNREGYAVSWQKGYMLGKGSFGTVYEAFTDDGNFFAVKEVSLLDHRSQGKQSIFQLRQEISLLSQFRHDNIVQYLGTDKDNDKLYIFLEIVTKGSLAVLYKKYHLMDSQVSAYTRQILSGLKYLHDRNVVHRDIKCANILVDATGSVKLADFGLAKVTKLNDVKSIGGSLNWMAPEVVNLRSGGYGLAADIWSLGCTVLEMLTRQPPYYHLEEMQVIFQIGGGEPPPVPGSLSINARDFILKCLQADPNKRPTVAQLLDHPFVNFCTTVNYGDQFQVPH 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g03146 405 Gene3D Transferase(Phosphotransferase) domain 1 135 402 - -
Viun6g03146 405 FunFam Mitogen-activated protein kinase 1, putative, expressed 134 400 - -
Viun6g03146 405 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 88 390 - -
Viun6g03146 405 PRINTS Tyrosine kinase catalytic domain signature 358 380 IPR001245 GO:0004672|GO:0006468
Viun6g03146 405 PRINTS Tyrosine kinase catalytic domain signature 249 267 IPR001245 GO:0004672|GO:0006468
Viun6g03146 405 PRINTS Tyrosine kinase catalytic domain signature 315 337 IPR001245 GO:0004672|GO:0006468
Viun6g03146 405 PRINTS Tyrosine kinase catalytic domain signature 214 227 IPR001245 GO:0004672|GO:0006468
Viun6g03146 405 SMART serkin_6 136 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g03146 405 ProSitePatterns Protein kinases ATP-binding region signature. 142 164 IPR017441 GO:0005524
Viun6g03146 405 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Viun6g03146 405 SUPERFAMILY Protein kinase-like (PK-like) 136 390 IPR011009 -
Viun6g03146 405 ProSiteProfiles Protein kinase domain profile. 136 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g03146 405 Pfam Protein kinase domain 138 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g03146 Viun-Chr6 33709673 33713134 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g03146 127 389 MAP Kinase Kinase Kinase AT4G08500 64.394 6.04e-116 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Viun6g03146 Pkinase 7e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g03146 - K13414 vra:106774995 708.368