Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g03141 ATGGATAGTGCAACTGGAAGAATTGACGCGGCGATTAAGAGTAGTAGTGATTCGATTTCGGGAAACGGAGAAGGCCGCGTCCATGGATTTGGTTGGGCAGTGGACAGCGCCGTAAGGAGTACGATTGCGTCGAATTCTGAAATATCCTCTGTCCATGGATTCGGTTGGGCAGTGGAGAATGGCATCAAGAGTAGCACTGCGCCAAATTTCGAAACACAGGACACTGTTCATAGTATCCGTTGGGCGGTGGACGATGCAATAAGGAGTAGGGTTGCACCAAATCCCGCTCCTCTCCACGGTTTTTCTTCGGCCGTGGATAATGCCATCAGCAGCAAGGTTGGTGCCGAAACAGCAGCTGAAGCTGAAACTGATTCTGAAGCGGAATTGAAAGAGGCGTGGTATGTGGAGGGGTCATGGCAGAAGGGTGAGATGTTAGGGAAGGGCTCCTTCGGCACAGTCTATGAAGCCATCTCAGAAGATGGATTCTTTTTTGCTGCAAAGGAGGTGTCTTTGCTGGATGATAGAAGGCATGGCAAACAATGCATTTTCCAACTTCAGCAGGAAATATCTCTTTTGAGTCAGCTCCGGCATGACAACATCGTTCGATATCTAGGCACAGACAAGGATAATGATAAGCTGTATATCTTCCTCGAGATTGTAACAAAAGGATCATTGGCAGTTTTCTATAAAAAGTATCATTTAATGGACTCTCAAGTTTCTGCATATACAAGGCAAATTTTAAGCGGCTTGAAGTATCTTCATGATCTTAATGTGGTTCACAGGGACATCAAGTGTGCCAATATACTGGTTGATGCAACCGGGTCCGTCAAGCTTGCAGATTTTGGTTTGGCAAAGGTTACCAAGTTAAATGATGTTAAATCAATTGGAGGCTCCCTGTACTGGATGGCCCCTGAGGTTGTCAACTTGAGGAGTGGTGGATATGGGTTAGCAGCAGATATATGGAGTTTAGGATGCACAGTGTTAGAGATGTTGACTCGTCAACCTCCTTACTCTCATTTGGAACCGAAGCAAGCAGTAGTTCGAATTGGCAGGGGTGAACTTCCACTAGTTCCGGAATCCCTATCCATAAATGCCCGAGATTTCATTCTTAAATGCTTACAACTTAACCCAAACAAACGCCCAACTGCTGCTCATCTACTGGACCATCCATTCGTAATTGCTCAACAACCGGATCATCCATTCACAAAGACATCTTCTGCTGCTCATCTACTGGACCATCCATTCGTAACTGCTCAACAACCGGATCATCCATTCACAGAGAAGACATCTTCCGAACTAAGGTCTAAATTAGGGTTTAAACTAACAACGGCTCAAATCAGATACCTGAACGGAGATCAGATACCTGACGAACTCCAAACCAATAAAGTCTAG 1392 0.454 MDSATGRIDAAIKSSSDSISGNGEGRVHGFGWAVDSAVRSTIASNSEISSVHGFGWAVENGIKSSTAPNFETQDTVHSIRWAVDDAIRSRVAPNPAPLHGFSSAVDNAISSKVGAETAAEAETDSEAELKEAWYVEGSWQKGEMLGKGSFGTVYEAISEDGFFFAAKEVSLLDDRRHGKQCIFQLQQEISLLSQLRHDNIVRYLGTDKDNDKLYIFLEIVTKGSLAVFYKKYHLMDSQVSAYTRQILSGLKYLHDLNVVHRDIKCANILVDATGSVKLADFGLAKVTKLNDVKSIGGSLYWMAPEVVNLRSGGYGLAADIWSLGCTVLEMLTRQPPYSHLEPKQAVVRIGRGELPLVPESLSINARDFILKCLQLNPNKRPTAAHLLDHPFVIAQQPDHPFTKTSSAAHLLDHPFVTAQQPDHPFTEKTSSELRSKLGFKLTTAQIRYLNGDQIPDELQTNKV 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g03141 463 MobiDBLite consensus disorder prediction 1 20 - -
Viun6g03141 463 Pfam Protein kinase domain 140 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g03141 463 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 108 399 - -
Viun6g03141 463 FunFam Mitogen-activated protein kinase 1, putative, expressed 137 400 - -
Viun6g03141 463 SUPERFAMILY Protein kinase-like (PK-like) 137 423 IPR011009 -
Viun6g03141 463 ProSitePatterns Protein kinases ATP-binding region signature. 145 167 IPR017441 GO:0005524
Viun6g03141 463 Gene3D Transferase(Phosphotransferase) domain 1 223 450 - -
Viun6g03141 463 Gene3D Phosphorylase Kinase; domain 1 116 220 - -
Viun6g03141 463 ProSiteProfiles Protein kinase domain profile. 139 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g03141 463 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Viun6g03141 463 SMART serkin_6 139 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g03141 Viun-Chr6 33669677 33675677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g03141 117 397 MAP Kinase Kinase Kinase AT4G08500 63.763 3.28e-123 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Viun6g03141 Pkinase 6.2e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g03141 - K13414 vra:106774995 551.592