Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g03124 ATGGTTGGGAGTGTTCACACTTTAAATGAGGACTCGAGAATCAACGGAGCAGTTGAACCGTTGCCTGAGGATTTTGACGCAACAGCTTTAATCATGGATCCTGTACCTTCTTCACTTGTAGACAATGGCAGTGTCAATGAAGAGGTGCAGATCAATAAGGGAAAAGAGAAAAGACTAATAGTTCTGGGAAGAAATATCCATACCATGTGTCTGGAAGTCACAGAGCCTGATGCAGACGACGATGTTACTGGGGACCGGGAAGCTTATATGGCTGGTGTGTTGGCCAGATACAAAAGAGCTTTGACTGAAAGGACAAAACATCATTTAGGGTACCCCTATAATTTGGATTTCGATTATGGTGCACTCTCACAACTTCAGCATTTTTCCATAAACAACTTGGGAGATCCATTTATTGAAAGCAACTATGGTGTCCACTCCCGACAGTTTGAAGTTGGTGTTTTGGATTGGTTTGCCCGACTGTGGGAACTGGAGAAAAACGAGTATTGGGGCTATATTACAAACTGTGGTACAGAAGGAAATCTCCATGGCATCCTTGTTGGGAGAGAGGTTTTCCCACATGGGATTTTGTACGCCTCACGAGAGTCACATTATTCTGTTTTTAAAGCTGCTCGAATGTACAGAATGGAATGTGTGAAGGTTGATACTCTTTGGTCTGGGGAGATTGATTGTGATGATTTCAAGGACAAGCTTCTTCAAAATCAGGACAAGCCAGCAATTGTAAATGTGAACATAGGTACAACTGTGAAAGGAGCTGTGGATGATCTTGATATGGTCATAAAGAAACTTGAAGAAGCAGGATTTTCACAGGACAGATTCTACATCCATTGTGACGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACGAGCTCCAAAAGTTACTTTTAAGAAGCCTATTGGCAGTGTCAGTGTTTCTGGCCACAAATTTGTAGGTTGTCCCATGCCTTGTGGTGTGCAGATAACAAGATTGAATTATGTCAATGCTCTCTCTAGGGATGTGGAGTACCTTGCTTCTAGGGATGCCACGATCATGGGTAGTCGGAATGGTCATGCTCCCATATTCCTTTGGTATACCTTGAATCGGAAAGGATATAGAGGTTTTCAGAAAGAAGTTCAGAAATGCTTGCGAAATGCACACTACTTCAAAGATCGCCTTGTTGAGGCTGGGATTGGTGCAATGCTTAATGAGCTGAGCAGCACGGTTGTGTTTGAGAGGCCACATGATGAGGAATTTGTACGCAAGTGGCAGTTAGCATGCAAGGGGAATATTGCACATGTGGTGGTCATGCCAAACATCACTATTGAGAAGCTGAATGATTTTCTGAACGAGCTTCTGGAGAAGCGTGCTACCTGGTTTCAAGATGGGAAGGATCAACCTTACTGTATATCGTCGGATGTAGGTGAAAAGAATTGCCTTTGTGCTTTGCACAAGTAA 1458 0.4328 MVGSVHTLNEDSRINGAVEPLPEDFDATALIMDPVPSSLVDNGSVNEEVQINKGKEKRLIVLGRNIHTMCLEVTEPDADDDVTGDREAYMAGVLARYKRALTERTKHHLGYPYNLDFDYGALSQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKNEYWGYITNCGTEGNLHGILVGREVFPHGILYASRESHYSVFKAARMYRMECVKVDTLWSGEIDCDDFKDKLLQNQDKPAIVNVNIGTTVKGAVDDLDMVIKKLEEAGFSQDRFYIHCDGALFGLMMPFVKRAPKVTFKKPIGSVSVSGHKFVGCPMPCGVQITRLNYVNALSRDVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYFKDRLVEAGIGAMLNELSSTVVFERPHDEEFVRKWQLACKGNIAHVVVMPNITIEKLNDFLNELLEKRATWFQDGKDQPYCISSDVGEKNCLCALHK 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g03124 485 Gene3D - 123 367 IPR015421 GO:0003824
Viun6g03124 485 Pfam Pyridoxal-dependent decarboxylase conserved domain 195 406 IPR002129 GO:0016830|GO:0019752|GO:0030170
Viun6g03124 485 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 309 330 IPR021115 GO:0016831
Viun6g03124 485 FunFam Serine decarboxylase 1 124 367 - -
Viun6g03124 485 Gene3D Aspartate Aminotransferase, domain 1 368 456 IPR015422 GO:0003824
Viun6g03124 485 PANTHER - 50 485 - -
Viun6g03124 485 SUPERFAMILY PLP-dependent transferases 106 455 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g03124 Viun-Chr6 33548910 33553284 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g03124 K25193 - gmx:100785163 937.947
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g01807 3 13327754 13331252 Viun6g03124 6 33548910 33553284 PCT