Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g03108 ATGATTCGTATTCTGGGGTTGGTGGTGCCTCTATCGTTGGCATCATATGTGTCGTACCATGTTTCAGTGTCCATGTTGTGTGATGCAACTGCATCTCGAACACACGTGGTGCTGAGTTGCACAGCGGGATTCCTCATTTGGTGTTACATATTATTATCGTTCTGTCGCCGATGCAAAGAAATGTTTGTATCAGATTCAGATGATGATGATGATGACGAAGAATTTGTAGACATTGAGACTCAAGAAATACGTAGAATAAGGGAGCTTTGGGAAATCCTAGAAGCAGCTTGTTTTATCAACAAAGCCATGACAGCATTGCCTCCTGCTGAATGCTTCTGTGAGGACCAAACCAAGGAATCTCGGTCTGATAATTGTTGTATTTGCTTGGAAGAGTTTAAGAATGGAGACTTCATTCAACCGTTTGGAGTGTGTCGTCATGAATTTCATTCCTCCTGCGTTCAGTCTTGGGTGCTCGCTGGAAACATTACATGTCCACTTTGTCGTCAGAAGTTGCCAATTAATGTTTAG 528 0.4261 MIRILGLVVPLSLASYVSYHVSVSMLCDATASRTHVVLSCTAGFLIWCYILLSFCRRCKEMFVSDSDDDDDDEEFVDIETQEIRRIRELWEILEAACFINKAMTALPPAECFCEDQTKESRSDNCCICLEEFKNGDFIQPFGVCRHEFHSSCVQSWVLAGNITCPLCRQKLPINV 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g03108 175 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 36 170 IPR045899 -
Viun6g03108 175 SMART ring_2 125 167 IPR001841 -
Viun6g03108 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 173 IPR013083 -
Viun6g03108 175 ProSiteProfiles Zinc finger RING-type profile. 125 168 IPR001841 -
Viun6g03108 175 Pfam Ring finger domain 123 168 IPR001841 -
Viun6g03108 175 SUPERFAMILY RING/U-box 121 171 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g03108 116 172 C3H Transcription Factor Family AT1G14200 42.105 4.51e-10 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g03108 - - vun:114188632 355.91