Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g03107 ATGGCAGATACCAGTGTCAACCTTCCACCAGGCTTTCGATTCTATCCCACAGATGAAGAGCTTGTTGTCCATTTCCTTCACCGAAAAGCCTCACTTTTGCCTTGCCACCCGGATGTCATCCCTGATCTTGAGCTCTATCAATATGATCCATGGCAACTTCATGGTAGAGCTTTGGCTGAGGGAAACCAATGGTACTACTACAGCAGAAGGACACAAAATAGAGTCACTGGCAATGGGTATTGGAAACCAACGGGAATGGAAGAACCAGTGGTTTCAAGCTCAAACAACAAGAGAGTTGGCATGAAGAAATATTTTGTTTTTCATGTAGGAGAAGCCGCTGCTGGTATCAAAACCAATTGGATAATGCAGGAGTATCGTCTATCAGATTCTGCTTCCTCTACCAGATCATCCAAAAGAAAACCTCAACCAAAAGCAGATTACAAGAAATGGGTGATATGTCGTGTTTATGAGCGTAATGGAGAGGAGGACAATGGAACAGAGCTCTCATGTTTGGATGAAGTATTCTTGTCATTGGATGATGATCTTGATGAAATAAGCTTACCAAATTAG 570 0.4263 MADTSVNLPPGFRFYPTDEELVVHFLHRKASLLPCHPDVIPDLELYQYDPWQLHGRALAEGNQWYYYSRRTQNRVTGNGYWKPTGMEEPVVSSSNNKRVGMKKYFVFHVGEAAAGIKTNWIMQEYRLSDSASSTRSSKRKPQPKADYKKWVICRVYERNGEEDNGTELSCLDEVFLSLDDDLDEISLPN 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g03107 189 Gene3D NAC domain 17 162 IPR036093 GO:0003677|GO:0006355
Viun6g03107 189 FunFam NAC domain-containing protein 104 17 161 - -
Viun6g03107 189 Pfam No apical meristem (NAM) protein 9 127 IPR003441 GO:0003677|GO:0006355
Viun6g03107 189 ProSiteProfiles NAC domain profile. 8 158 IPR003441 GO:0003677|GO:0006355
Viun6g03107 189 SUPERFAMILY NAC domain 5 157 IPR036093 GO:0003677|GO:0006355
Viun6g03107 189 PANTHER NAC TRANSCRIPTION FACTOR 56 8 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g03107 Viun-Chr6 33442316 33443725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g03107 1 176 NAC Transcription Factor Family AT1G61110 40.000 1.52e-44 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun6g03107 NAM 7.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g03107 - - gmx:100793989 358.221