Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g03099 ATGGAGAGAGTGACTTCATCTTTTATGAGTTTCTTTTTTGTTTGGGCAATTTTGGTGCTTGATTTGGTACTTAAGACTTCTGGCAATCAGGAAGGCGATGCCCTGAATGCATTGAAGAGCAACTTGCTTGATCCTAACAACGTTCTTCAAAGCTGGGATGCTACTCTTGTCAATCCCTGCACTTGGTTTCATGTTACGTGCAATAGTGATAACAGTGTGACCCGTGTTGATCTTGGAAATGCAGACCTTTCTGGTCAACTGGTTTCACAACTTGGTCAGCTCACAAATTTACAGTACTTGGAACTTTATAGTAATAATATAACCGGAAAAATTCCAGATGAGCTTGGAAACTTGACAAACTTGGTGAGCTTGGATCTGTACTTGAACAATTTAACTGGTTCTATACCAACTACGCTGGGCAACCTTGCAAAACTACGTTTCCTGCGTCTCAACAATAATACCTTGACGGGAGGCATACCCATGTCTCTGACAAATGTTTCTTCTCTGCAAGTTCTTGATCTCTCGAACAACAAGCTAAAAGGGAATATCCCAGTGAATGGTTCATTTTCATTGTTTACCCCCATCAGTTATCAAAATAATCCTGACTTGATACAGCCCAAAAACTCTCCATCTCCAGTTTCTCCAACTCCACCACCAGCTTCTTCAGGAAATAGTAACACTGGAGCTATTGCTGGAGGAGTTGCTGCTGGTGCTGCTCTGTTGTTTGCAGCCCCTGCAATTGCACTTGCTTATTGGCGAAGAAGGAAACCTCAGGATCATTTCTTTGATGTTCCTGCTGAGGAGGATCCTGAAGTTCACCTTGGTCAACTTAAAAGGTTTTCGCTACGTGAGCTGCAAGTTGCCACCGATAACTTTAGTAACAAACACATTTTGGGTAGAGGTGGATTTGGAAAGGTTTATAAAGGACGCTTAGCTGATGGATCTCTTGTGGCTGTGAAAAGGCTTAAAGAGGAACGTACGCAGGGTGGGGAGCTCCAATTTCAAACTGAAGTGGAAATGATCAGCATGGCTGTGCATCGTAATTTGCTTCGGCTTCGTGGTTTTTGTATGACACCTACCGAACGATTGCTTGTGTATCCTTTCATGGCTAATGGAAGTGTAGCATCATGTTTACGAGAACGTCAAGAATCTCAACCACCGCTTGGCTGGCCAGAACGGAAGCGTATTGCACTGGGATCTGCGCGGGGGCTTGCTTATTTACATGATCATTGTGACCCTAAGATTATTCATCGTGATGTCAAAGCAGCAAATATTTTGTTGGATGAGGAATTTGAAGCAGTTGTTGGAGATTTTGGTTTAGCAAAACTTATGGATTATAAAGATACTCACGTTACTACTGCTGTACGTGGAACAATTGGGCATATAGCGCCTGAGTACCTTTCAACTGGAAAATCTTCAGAGAAAACTGATGTTTTTGGATATGGTGTGATGCTTCTTGAACTCATAACTGGACAAAGGGCTTTCGATCTAGCTCGACTTGCCAATGATGACGATGTGATGTTGCTTGATTGGGTTAAAGGACTTCTCAAAGACAGGAAATTGGAAACACTGGTGGATGCAGATTTACAGGGCAATTATATTGATGAGGAGGTTGAGCAATTAATCCAAGTGGCATTGCTATGCACACAGGGCTCTCCTATGGAAAGACCAAAGATGTCTGAGGTGGTGAGAATGCTAGAAGGTGATGGTTTGGCTGAGAAATGGGAGCAATGGCAGAAAGATGAGACGTTCCGGCAAGACTTCAACAACAACATTCATCACCCTAATGCAAATTGGATAGTAGATTCAACTTCCCACATCCAAGCAGATGAACTGTCAGGTCCTAGATGA 1851 0.429 MERVTSSFMSFFFVWAILVLDLVLKTSGNQEGDALNALKSNLLDPNNVLQSWDATLVNPCTWFHVTCNSDNSVTRVDLGNADLSGQLVSQLGQLTNLQYLELYSNNITGKIPDELGNLTNLVSLDLYLNNLTGSIPTTLGNLAKLRFLRLNNNTLTGGIPMSLTNVSSLQVLDLSNNKLKGNIPVNGSFSLFTPISYQNNPDLIQPKNSPSPVSPTPPPASSGNSNTGAIAGGVAAGAALLFAAPAIALAYWRRRKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNKHILGRGGFGKVYKGRLADGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMANGSVASCLRERQESQPPLGWPERKRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDRKLETLVDADLQGNYIDEEVEQLIQVALLCTQGSPMERPKMSEVVRMLEGDGLAEKWEQWQKDETFRQDFNNNIHHPNANWIVDSTSHIQADELSGPR 616
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Viun6g03099 616 ProSiteProfiles Protein kinase domain profile. 292 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g03099 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 415 427 IPR008271 GO:0004672|GO:0006468
Viun6g03099 616 CDD STK_BAK1_like 298 569 - -
Viun6g03099 616 FunFam Somatic embryogenesis receptor-like kinase 1 369 586 - -
Viun6g03099 616 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Viun6g03099 616 Gene3D Phosphorylase Kinase; domain 1 261 368 - -
Viun6g03099 616 SUPERFAMILY Protein kinase-like (PK-like) 271 567 IPR011009 -
Viun6g03099 616 SUPERFAMILY L domain-like 30 195 - -
Viun6g03099 616 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 9 577 - -
Viun6g03099 616 Gene3D Transferase(Phosphotransferase) domain 1 369 586 - -
Viun6g03099 616 FunFam Somatic embryogenesis receptor kinase 1 27 213 - -
Viun6g03099 616 Gene3D Ribonuclease Inhibitor 27 211 IPR032675 -
Viun6g03099 616 Pfam Protein kinase domain 293 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g03099 616 ProSitePatterns Protein kinases ATP-binding region signature. 298 320 IPR017441 GO:0005524
Viun6g03099 616 FunFam Somatic embryogenesis receptor kinase 1 261 368 - -
Viun6g03099 616 Pfam Leucine rich repeat 95 155 IPR001611 GO:0005515
Viun6g03099 616 SMART serkin_6 292 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g03099 616 MobiDBLite consensus disorder prediction 201 226 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Viun6g03099 Viun-Chr6 33373845 33381312 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g03099 1 616 Receptor kinase-like Gene Family AT4G33430 78.346 0.0 985
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Viun6g03099 Pkinase 1.1e-44 CL0016
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g03099 K13416 - gmx:100800522 1142.87