Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g03088 ATGGCAGCTGCAACATCTGGTGCTGTGTTAAATGGGTTGGGATCTTCCTTCTTGAGTGGAGGAAGCAGGAGCCAAACCCTTCTGGCCACTGCTATTGGAGGCAAACTCGGTGTTGCAGTTAGTCCTAGGAGACTCATTGTGGTTGCTGCGGCAGCACCAAAGAAGTCATGGCTCCCTGGTGTTAGAGGTGGTGGCAATCTCGTCGACCCAGAATGGCTTGATGGATCGCTACCAGGTGACTATGGTTTTGACCCACTAGGCCTGGGGAAGGACCCATCATTCCTGAAATGGTACAGAGAAGCTGAGCTGATTCATGGGAGGTGGGCAATGGCTGCAGTTGTAGGTATCTTCGTGGGGCAGGCCTGGAGTGGAGTGCCATGGTTTTTGGCTGGAGCAGACCCCAATGCAATTGCTCCTTTTTCCTTTGGTTCTCTTTTGGGAACCCAGTTGCTTCTTATGGGATGGGTTGAGAGCAAGAGATGGGTGGATTTCTTCAACCCAGACTCACAGTCAGTGGAATGGGCGACTCCATGGTCAAAAACTGCTGAGAACTTTGCTAATGCTACTGGTGAACAAGGGTACCCAGGAGGCAAATTCTTTGACCCTTTGGGCTTCGCTGGCACTCTCAAGGATGGAGTTTACATCCCGGATACAGAGAAGCTGGAAAGATTGAAATTAGCTGAGATTAAGCATGCCAGGATTGCAATGTTGGCCATGCTCATTTTCTACTTTGAGGCTGGACAAGGAAAGACCCCCCTAGGTGCACTTGGCTTGTAA 777 0.5058 MAAATSGAVLNGLGSSFLSGGSRSQTLLATAIGGKLGVAVSPRRLIVVAAAAPKKSWLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPSFLKWYREAELIHGRWAMAAVVGIFVGQAWSGVPWFLAGADPNAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSKTAENFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYFEAGQGKTPLGALGL 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g03088 258 Gene3D Chlorophyll a/b binding protein domain 70 257 - -
Viun6g03088 258 Pfam Chlorophyll A-B binding protein 70 246 IPR022796 -
Viun6g03088 258 FunFam Chlorophyll a-b binding protein, chloroplastic 70 257 - -
Viun6g03088 258 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 54 256 IPR001344 GO:0009765|GO:0016020
Viun6g03088 258 SUPERFAMILY Chlorophyll a-b binding protein 67 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g03088 Viun-Chr6 33295102 33296533 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g03088 1 258 Chloroplast and Mitochondria Gene Families AT1G15820 81.154 2.69e-151 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g03088 K08917 - gmx:100527463 496.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g03088 6 33295102 33296533 Viun6g03088 6 33295102 33296533 ECH
Viun3g01772 3 13004509 13005838 Viun6g03088 6 33295102 33296533 PCT