Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g03082 ATGAATATTTCATTCATTATCAATGTGGTTCTTCTGCTTGCAATTGTATTGCTCTTGCTGCTTTACTACAACACATACACAAGGCTGAATAAAATAGTGAAGGGGCAGATTCCGACAGTCATAGAAAAAGAGGATGACGTGGAGATCAGTGTTGACAAGAAGATAGAGATAGGAGAGGGGACAATGATTATGACAGTGGAAGAGAGAAAGGAACTCAAATTCTTTAATCATAACCAGAAATTTCAAATGGGTGAACTTCTTAGAGCTTCTGCTGAGCCACTAGGTCATGGGATCTTGGGAAACAGTTATAAGGCGATGCTGAATACAGGACCTACCATTGTCGTGAAAAGGCTAAGGGACTTGAAGCCATTTACTAAGGAGGAGTTTGAGAAGATAGTGAATTCAATTGCTGATATGAAGCACCCCAATTTGTTGCCTTTGCTTGCTTACTACCATTCCAGAGATGAGAAGCTCATGCTTTACAGTTATGCAGGAAATGGAAATCTTTTCTCCAGACTTCATGATAGAGGTGGAAACCGGGCTCCGTTCAGTTGGAACTCGAGATTGTCGGTTGCAAGAGGAGTGGCACGAGCATTGGTGTACCTGCACCTCAACCACAAGTTCCAAAACGTTGTCCCACACGGCAACTTGCGGTCTTCAAACGTACTATTCGATGAAAACGATGCGGTTCTTGTTTCTGACTTCGGTCTTGCCTCCTTGATAGCACAACCGATTGCAGCTCAGCACATGGTTGTTTACAAATCACCTGAATATGGGTATGCAAGAAAGGTGACAATGCAATCCGATGTGTGGAGCTATGGTTCACTTTTGATAGAGCTTCTAACCGGGAAAGTATCTATTAACTCGGCTCCACAAGGAACCAATGGCGTGGATTTGTGCAGTTGGGTTCACAGAGCCGTGAGGGAAGAATGGACGGCTGAGATCTTCGACAAAGAAATATCTGGCCAAAAGAGTGCACTTCCTGGGATGCTGAGGTTGTTGCAGATTGCAATGCGTTGCATCGAGAGGTTCCCTGAGAAGCGCCCTGAGATGAGAGAGGTGACGAGAGAAGTGGAGAAAATACAGGCCCCGGTGATGACTGAAGATGATGACGATGTGTCTGGGGATAGGTCCCTAACTGATGATTCCCTTTCAACCAGTACCTCCATGATTGGAGACGAAAGATAG 1188 0.4487 MNISFIINVVLLLAIVLLLLLYYNTYTRLNKIVKGQIPTVIEKEDDVEISVDKKIEIGEGTMIMTVEERKELKFFNHNQKFQMGELLRASAEPLGHGILGNSYKAMLNTGPTIVVKRLRDLKPFTKEEFEKIVNSIADMKHPNLLPLLAYYHSRDEKLMLYSYAGNGNLFSRLHDRGGNRAPFSWNSRLSVARGVARALVYLHLNHKFQNVVPHGNLRSSNVLFDENDAVLVSDFGLASLIAQPIAAQHMVVYKSPEYGYARKVTMQSDVWSYGSLLIELLTGKVSINSAPQGTNGVDLCSWVHRAVREEWTAEIFDKEISGQKSALPGMLRLLQIAMRCIERFPEKRPEMREVTREVEKIQAPVMTEDDDDVSGDRSLTDDSLSTSTSMIGDER 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g03082 395 MobiDBLite consensus disorder prediction 379 395 - -
Viun6g03082 395 SUPERFAMILY Protein kinase-like (PK-like) 92 363 IPR011009 -
Viun6g03082 395 MobiDBLite consensus disorder prediction 352 373 - -
Viun6g03082 395 Gene3D Transferase(Phosphotransferase) domain 1 165 381 - -
Viun6g03082 395 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 6 362 IPR046959 -
Viun6g03082 395 MobiDBLite consensus disorder prediction 352 395 - -
Viun6g03082 395 Gene3D Phosphorylase Kinase; domain 1 58 163 - -
Viun6g03082 395 SMART serkin_6 88 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g03082 395 Pfam Protein tyrosine and serine/threonine kinase 92 357 IPR001245 GO:0004672|GO:0006468
Viun6g03082 395 ProSiteProfiles Protein kinase domain profile. 88 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g03082 Viun-Chr6 33261906 33263273 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g03082 53 387 Receptor kinase-like Gene Family AT2G36570 39.888 8.33e-74 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Viun6g03082 PK_Tyr_Ser-Thr 1.2e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g03082 - - vra:106774985 707.983