Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g03069 ATGGCGGAGGGAGCTGCTTATGGATTGCGTCGTCCATTAGATATTCAACAATTACAATTTGAAGCCCAGCATCGGTGGTTGCGACCTGCAGAAATTTGTGAAATTCTTCGTAATTATCAGATGTTTCAAATCACTTCAGAACCTCATAACAGGCCACCAAGTGGTTCACTTTTTTTATTTGATAGAAAGGTTTTGAGGTACTTTAGAAAGGATGGACATAATTGGAGAAAGAAAAAGGATGGAAAAACTGTGAAAGAAGCTCATGAAAAGTTGAAGGTTGGAAGTGTTGATGTGTTGCATTGCTACTATGCCCATGGAGAAGATAATGAAAATTTTCAAAGGCGAAGCTACTGGATGCTAGAACCGGATATGATGCACATAGTATTTGTCCATTACTTGGAAGTTAAGGGTAACAAAAATATTGTAGTAAATACTGAAGGTGATGAGGTCCCGCCAGATTCCCAAAAGGTTACTTCACTTAGCACAGATTCCATCAGCCCATCATCCAGTTTAATGTCTTTACGTGAAGATGCTGATTCTGAGGATGTCTACCAAGCTAGTTCTGGGTTGCGGCCATTACATGGGTCACAACATATAGGGAATGGTCCATTGCCAGAAAAGATTGATGCTGGTTTGAACAATTCATATGATACGAGTTCCTTTTCAGGTGATCATGGACAGTCATCAATTTCCGGAACAGATTATATCCCAGTTTTCGACGGGGATAAATTTAGAGGAAATGACACTCCTTATTTTGATGGTGAGAAAGCACATGGCGTGGCACCATGGGACACTGTCTTGCAAAGCGCTGCCAAATTGCATAATGATCCTTCTCTTGCATCGTTTCCTTCCATCCCTCCTAGTTCAATGGGTCTTGAACAAGAACATACCATTTTTGGTGACCTTTTAACTGGCAAAAGTGATCTCACCGAGGAAGAAGAGAGCTCTCAGTCTTTCCAATCGAGTTGGCAGATTCCTTTTGAAGACAATTCGGGAGACATGCCAATGTCAAGGCAGAATCAATCATTTGGTCTGCATTTTGGATCTGATTATGGGACCAATTTACTAGGGTATGAAGCTCGTAATGCAAGTTCTGAAATTGCTCCGATCCTGTACAGTTTTAATGGTGATCCAAAAGAGCAGCCTATGCAGAAAAACTATCCACACGAGCATGCAGATGGACAATCTCAACATACTCTAAAATCCAATTCTGCAAACAAAGTTCTTGATGAAGAATCTATCAACTATGGCTTAACTGTGAAGCGTACATTATTGGACAAAGATGAGAGCTTGAAGAAGGTTGATAGTTTCTCTCGGTGGGTTACTAAAGAACTAGGAGAGGTAGCTGATTTGAATATGCAGTCCACACCTGGTATTTCATGGAGTACAGATGAATGCCAGCATGTGATAGATGATAGCTCATTGAGCCCATCTCTCTCTCAGGACCAACTGTTTAGTATAAATGATTTTTCACCTAAATGGGCTTATGCTGAGTTAGATATTGAGGTGTTGATTATTGGATCATTTTTGAGGAGTCAACCAGAGGTGACAACATGTAACTGGTCCTGTATGTTTGGGGAAGTTGAGGTTCCAGCTGAGGTTTTAGCTGATGGAATTTTGTGCTGTCAAGCTCCCCGTCATAAAGTTGGACGGGTCCCATTCTATGTAACATGTTCCAATAGGCTAGCTTGTAGTGAAGTGCGGGAATTCGATTTCAGAGAAGGCTTTGCTAGAAGTGTAGATTTTGCAGAATTTTTTGGCAGTTCAACTGAAATGCAGATTCATTTGCGACTGGAGAGTTTTCTTACTTTAAAGCCAGTGAACCCTTCAAACCATTCTTTTGAGGGTGATATGGAGAAAAGGAACTTAATTTTCAAGCTTATTTCACTGAGAGAGGAAGAGGAATATTCTATTAAGGACGAACCAACTACAGAATTGGATATATCCCAACACATGGTGAGGGAGCATCTTTTTCACAGGCAGGTTAAAGAGAAGTTGTACTCATGGCTTCTTCACAAAGTAACTGAGAATGGTAAAGGACCAAATGTATTAGATGAGGGTGGGCAAGGTGTGCTTCACTTAGCAGCTTTTCTTGGTTACGACTGGGCCATAAATCCAATTATAGCTGCTGGAGTTAATATCAACTTCCGAGATGTGAATGGATGGACAGCTCTTCACTGGGCTGCATTCTGTGGCAGAGAACGGACAGTTGCTTTCCTGGTCTCCATGAGAGCAGATTGTGGAGCAGTGACAGATCCATCTCCTGCATTTCCGTTAGGTAGACCAGCTGCAGATCTTGCCTCTGCAAACGGGCACAAAGGAATCTCTGGTTTTCTTGCTGAGTGTTCATTAACTCAGAATCTTGAATCCCTCAAAGTGGATGATCAAAAAGGTGGTCGGCAAGAAATTTCAGGAATGAAAGTGGTGCAGACAGTTTCAGAACGAACTGCAACACCTATGCTCTATGGTGATATGCCAGATGCCCTCTGCCTCAAGGATTCGCTCACTGCTGTCCGAAATGCAACACAAGCTGCTGATCGTATACATCAAGTATTCAGAATGCAGTCATTTCAGAGGAAGCTGTTAACTCAGTATGAAGGTGATGATGAGCTTGGATTGTCAGATCAGCAGGCTTTGTCTCTTCTAGCTTCCAGGGCTTACAAATCTGGACAAGGACATGGTTTAGCCAATGCTGCTGCAATACACATACAGAAAAAGTTTCGTGGTTGGAAGAAGAGAAAAGAATTCTTGATGATTCGGCAAAGAGTTGTTAAAATCCAGGCCCATATAAGAGGTCACCAGGTACGGAAACAGTATAAACCAATCATCTGGTCTGTGGGGATCCTAGAAAAGGTCATATTACGTTGGAGGCGCAAGGGTAGCGGTTTACGTGGATTTCGACCAGATGCGCTTAATAAAGTCCCCAGTCAACAAAATGATTCTCAGAAAGAAGATGATTATGATTTCCTCAAGGAGGGACGGAAACAAAAGGAAGAAAAGATCCAAAAGGCCTTATCAAGAGTGAAGTCCATGGTTCAGTATCCAGAGGCACGTGCCCAATACCGACGTCTGTTAAATGTTGTCGAGGACTTCCGTCAAACCAAGGGACCTAACGAGGGTTTGACCAGTTCTGAAGGGACAGTTGATGGTGTGGAGGATTTAATTGATATTGATATGCTTTTAGAAGACGATAATTTCATTCCTATAGCATTTAACTGA 3219 0.42 MAEGAAYGLRRPLDIQQLQFEAQHRWLRPAEICEILRNYQMFQITSEPHNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEDNENFQRRSYWMLEPDMMHIVFVHYLEVKGNKNIVVNTEGDEVPPDSQKVTSLSTDSISPSSSLMSLREDADSEDVYQASSGLRPLHGSQHIGNGPLPEKIDAGLNNSYDTSSFSGDHGQSSISGTDYIPVFDGDKFRGNDTPYFDGEKAHGVAPWDTVLQSAAKLHNDPSLASFPSIPPSSMGLEQEHTIFGDLLTGKSDLTEEEESSQSFQSSWQIPFEDNSGDMPMSRQNQSFGLHFGSDYGTNLLGYEARNASSEIAPILYSFNGDPKEQPMQKNYPHEHADGQSQHTLKSNSANKVLDEESINYGLTVKRTLLDKDESLKKVDSFSRWVTKELGEVADLNMQSTPGISWSTDECQHVIDDSSLSPSLSQDQLFSINDFSPKWAYAELDIEVLIIGSFLRSQPEVTTCNWSCMFGEVEVPAEVLADGILCCQAPRHKVGRVPFYVTCSNRLACSEVREFDFREGFARSVDFAEFFGSSTEMQIHLRLESFLTLKPVNPSNHSFEGDMEKRNLIFKLISLREEEEYSIKDEPTTELDISQHMVREHLFHRQVKEKLYSWLLHKVTENGKGPNVLDEGGQGVLHLAAFLGYDWAINPIIAAGVNINFRDVNGWTALHWAAFCGRERTVAFLVSMRADCGAVTDPSPAFPLGRPAADLASANGHKGISGFLAECSLTQNLESLKVDDQKGGRQEISGMKVVQTVSERTATPMLYGDMPDALCLKDSLTAVRNATQAADRIHQVFRMQSFQRKLLTQYEGDDELGLSDQQALSLLASRAYKSGQGHGLANAAAIHIQKKFRGWKKRKEFLMIRQRVVKIQAHIRGHQVRKQYKPIIWSVGILEKVILRWRRKGSGLRGFRPDALNKVPSQQNDSQKEDDYDFLKEGRKQKEEKIQKALSRVKSMVQYPEARAQYRRLLNVVEDFRQTKGPNEGLTSSEGTVDGVEDLIDIDMLLEDDNFIPIAFN 1072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g03069 1072 SMART ANK_2a 759 788 IPR002110 GO:0005515
Viun6g03069 1072 SMART ANK_2a 687 716 IPR002110 GO:0005515
Viun6g03069 1072 SMART ANK_2a 720 749 IPR002110 GO:0005515
Viun6g03069 1072 Coils Coil 987 1007 - -
Viun6g03069 1072 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Viun6g03069 1072 Pfam IPT/TIG domain 487 561 IPR002909 -
Viun6g03069 1072 MobiDBLite consensus disorder prediction 146 171 - -
Viun6g03069 1072 SMART iq_5 918 940 IPR000048 GO:0005515
Viun6g03069 1072 SMART iq_5 895 917 IPR000048 GO:0005515
Viun6g03069 1072 Gene3D Immunoglobulins 480 575 IPR013783 -
Viun6g03069 1072 FunFam Calmodulin-binding transcription activator 2 895 943 - -
Viun6g03069 1072 Gene3D - 896 942 - -
Viun6g03069 1072 MobiDBLite consensus disorder prediction 967 986 - -
Viun6g03069 1072 Pfam Ankyrin repeats (3 copies) 669 748 IPR002110 GO:0005515
Viun6g03069 1072 SUPERFAMILY E set domains 487 572 IPR014756 -
Viun6g03069 1072 MobiDBLite consensus disorder prediction 151 171 - -
Viun6g03069 1072 SMART CG_1_2 18 136 IPR005559 GO:0003677
Viun6g03069 1072 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Viun6g03069 1072 MobiDBLite consensus disorder prediction 377 406 - -
Viun6g03069 1072 ProSiteProfiles IQ motif profile. 919 943 IPR000048 GO:0005515
Viun6g03069 1072 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 895 946 IPR027417 -
Viun6g03069 1072 FunFam Calmodulin-binding transcription activator 2 480 576 - -
Viun6g03069 1072 ProSiteProfiles Ankyrin repeat profile. 720 752 IPR002110 GO:0005515
Viun6g03069 1072 SUPERFAMILY Ankyrin repeat 350 781 IPR036770 -
Viun6g03069 1072 ProSiteProfiles IQ motif profile. 896 925 IPR000048 GO:0005515
Viun6g03069 1072 Pfam IQ calmodulin-binding motif 921 940 IPR000048 GO:0005515
Viun6g03069 1072 Pfam IQ calmodulin-binding motif 898 916 IPR000048 GO:0005515
Viun6g03069 1072 Gene3D - 653 792 IPR036770 -
Viun6g03069 1072 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 1034 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g03069 Viun-Chr6 33200771 33212000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g03069 1 1044 CAMTA Transcription Factor Family AT5G64220 54.112 0.0 1080
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Viun6g03069 Ank_2 3.9e-06 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g03069 K21596 - gmx:100818124 1847.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g01753 3 12754981 12765550 Viun6g03069 6 33200771 33212000 PCT