Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g03055 ATGGAAAACGATGACGACGTTGACATGCACGCAGCTGACGCCAACGAAGAATTGGATGACATGAAGAAGCGCTTGAAAGAGATGGAGGATGAAGCTGCTGCGTTGCGAGAGATGCAGGCCAAGGTCGAGAAGGAAATGGGATCTGTTCAAGATCCTGCAACTGCTTCCGCAAGTCAGGCCAACAGAGAGGAAATAGATGCTCGATCAGTCTTTGTAGGCAATGTGGACTATTCATGCACTCCTGAAGAAGTGCAACAGCATTTTCAGTCTTGTGGAACAGTAAACAGAGTCACCATTCGAACTGATAAGTTTGGCCAACCCAAGGGTTATGCTTATGTTGAGTTCCTTGAGGTGGAGGCTGTTCAGGAGGCCCTTTCCTTGAATGAATCTGAACTTCATGGACGCCAATTAAAGGTGACAGCTAAAAGGACCAATATACCAGGGATGAAACAGTATCGTTCTCGCCAGTCGAATCCTTACGCGGGAGGCTTTCGAGGCAGAACCCCATATGCACCTCCCTTTATCTATTCTCCATATGGATATGGAAAGGTCCCAAGGTTCAGAATGGCAATGCGCTACAGCCCCTACTATTAA 594 0.4747 MENDDDVDMHAADANEELDDMKKRLKEMEDEAAALREMQAKVEKEMGSVQDPATASASQANREEIDARSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAVQEALSLNESELHGRQLKVTAKRTNIPGMKQYRSRQSNPYAGGFRGRTPYAPPFIYSPYGYGKVPRFRMAMRYSPYY 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g03055 197 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 138 IPR000504 GO:0003723
Viun6g03055 197 MobiDBLite consensus disorder prediction 43 62 - -
Viun6g03055 197 CDD RRM_II_PABPs 69 140 - -
Viun6g03055 197 SMART rrm1_1 69 140 IPR000504 GO:0003723
Viun6g03055 197 Gene3D - 4 141 IPR012677 -
Viun6g03055 197 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 144 IPR000504 GO:0003723
Viun6g03055 197 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 9 158 - -
Viun6g03055 197 SUPERFAMILY RNA-binding domain, RBD 56 168 IPR035979 GO:0003676
Viun6g03055 197 Coils Coil 11 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g03055 Viun-Chr6 33122051 33126475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g03055 69 139 Eukaryotic Initiation Factors Gene Family AT2G36660 31.944 4.23e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g03055 K14396 - gmx:100791351 371.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g01736 3 12551371 12556578 Viun6g03055 6 33122051 33126475 PCT