LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun6g03053	ATGTGGCGCGCCCGATGTTTTCCCTCCCAAAGGAGTGGGAGTGTGCAGAGCAGAGAAGCATGGTTCACGGAGAACAACATCGCTGATCCAGATTACTTCCGGAAGCCACTGGTCTCCTTTCTCGAACGCCACCATTCCGACCAGATCCACTCCATTGTTTCTTCTCCCGATTCCGACCTTCACTTCCCTCTTTTCGTCGATTTTGCAGAACTGTTTGATGAGGAAACTCACGTTGCTTGTCTCCTCTTTGTTCAACCCAATACCTATTTGCGAGTATTCGACGCGGCTGCCATTTCGGCCCAGCAAGCCGTATTGGCGGATGGTAAGAAAGGGGTGGAGAAAAAGTCCATTCATGTTCGTATTAATACCTGTGGCTCATTCCTTGAATTCCCTGAAACTTTTCCAAGCATTGGACGTGTTCGCGTGGAGCACCATGGAATTCTTCTCACTCTCAAAGGGATAGTGATTAGGTCTGGAGCAATCAAGATGCATGAAGGGGAGAGGACGTACATGTGTCACAAATGCAAAAACAGCTTCCCAGTACATCCTTTGGTGGAAGCTCGAAACTCCATATCATTACCTTCAATTTGTCCAATTCGGAACTCCAAGCCCTGTGCAGGCACGAAATTCCAGTATGTAGAGAATACTATAGTATGCCATGATTATCAGGAGATAAAAATTCAAGAAAGTACACAGGTGCTAGGTGTTGGGGCAATTCCTCGTTCAATTCTTGTCATCCTAGAGGATGACCTCGTTGATGTTGTTAAAGCTGGAGATGATGTGATTGTCTCTGGTGTCTTAACATCAAAATGGGCTCCAGAGTTGAAGGATGTGCGTTGTGACCTTGATCCTGTATTAATTGCCAACAATGTAAGGAGAGTCAATGAACTGAAATCAGAAATTGAAGTTTTTGACGATATTGTTATGAAATTCAAGCAGTTTTGGGCTCACTTCAAAGGTTCACCTCTAAAAGGGAGGAATGCTATTCTGCGAGGAATTTGCCCGCAAGTATTTGGCCTTTTCACTGTTAAGTTGGCTGTTGCATTAACTCTTATTGGAGGCGTGCAACATGTCGATGCTTCTGGAACCAGGATAAGAGGGGAGTCCCACTTACTCTTGGTTGGTGATCCTGGCACTGGAAAATCTCAGTTTCTGAAATTTGCTGCAAAATTGAGCAACCGCTCTGTTATTACCACTGGATTGGGAAGCACAAGTGCTGGATTGACTGTTACTGCAGTGAAGGATGGAGGGGAATGGATGTTGGAAGCTGGAGCTCTTGTTTTGGCAGATGGAGGATTGTGTTGCATAGATGAATTTGATAGTATGAGGGAGCATGATAGAGCAACAATACATGAAGCCATGGAGCAGCAGACAATAAGTGTTGCCAAGGCTGGTCTTGTAACAACACTCAGCACTAGAACAACTGTATTTGGTGCTACAAATCCCAAGGGACAGTATGATCCTGATCAACCTCTGTCTGTCAATACAACACTCTCTGGTCCTTTATTAAGCAGGTTCGATATTGTCCTTGTTCTATTGGATACAAAAAATCCTGATTGGGATGCAGTGGTTTCATCTCATATTCTTTCTGAGGCAGAATCGGGTAGCACCACTAATGACGAAGATCTGGTAAATAGCTGGCCACTTGCTACACTCAAGAGGTACATACACTATGTGAAAGAACATTTCAGACCAGTCCTAACAAGAGAGGCTGAAATAATTATATCCAGCTATTATCAACTTCAAAGGAAATCTGCAACTGATAATGCAGCTAGAACAACTGTCCGCATGTTGGAAAGTTTGATACGCCTAGCACAAGCCCATGCAAGATTGATGTTCAGAAATGAGGTGACAAGACTAGATGCCATAACAGCTATTTTATGCATAGAATCATCCATGACTACCTCAGCTATCGTAGATTGCATTGGGAATGCTTTGCATTCCAATTTTGCTGACAACCCTGATCAGGAATGTATCCTTGCCGTCATTCTTAGCATAAATTAG	2004	0.4386	MWRARCFPSQRSGSVQSREAWFTENNIADPDYFRKPLVSFLERHHSDQIHSIVSSPDSDLHFPLFVDFAELFDEETHVACLLFVQPNTYLRVFDAAAISAQQAVLADGKKGVEKKSIHVRINTCGSFLEFPETFPSIGRVRVEHHGILLTLKGIVIRSGAIKMHEGERTYMCHKCKNSFPVHPLVEARNSISLPSICPIRNSKPCAGTKFQYVENTIVCHDYQEIKIQESTQVLGVGAIPRSILVILEDDLVDVVKAGDDVIVSGVLTSKWAPELKDVRCDLDPVLIANNVRRVNELKSEIEVFDDIVMKFKQFWAHFKGSPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTRIRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTTVFGATNPKGQYDPDQPLSVNTTLSGPLLSRFDIVLVLLDTKNPDWDAVVSSHILSEAESGSTTNDEDLVNSWPLATLKRYIHYVKEHFRPVLTREAEIIISSYYQLQRKSATDNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSAIVDCIGNALHSNFADNPDQECILAVILSIN	667

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun6g03053	667	Gene3D	-	164	220	-	-
	Viun6g03053	667	ProSiteProfiles	MCM family domain profile.	325	528	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Viun6g03053	667	Gene3D	-	140	268	IPR012340	-
	Viun6g03053	667	FunFam	Probable DNA helicase MCM9	303	637	-	-
	Viun6g03053	667	PANTHER	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	39	638	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
	Viun6g03053	667	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	366	381	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Viun6g03053	667	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	502	510	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Viun6g03053	667	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	424	438	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Viun6g03053	667	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	452	465	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Viun6g03053	667	Pfam	MCM AAA-lid domain	551	632	IPR041562	-
	Viun6g03053	667	CDD	MCM9	328	632	-	-
	Viun6g03053	667	Gene3D	-	310	638	IPR027417	-
	Viun6g03053	667	Pfam	MCM P-loop domain	327	530	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Viun6g03053	667	SMART	mcm	133	634	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
	Viun6g03053	667	SMART	AAA_5	367	516	IPR003593	GO:0016887
	Viun6g03053	667	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	335	642	IPR027417	-
	Viun6g03053	667	Pfam	MCM OB domain	139	268	IPR033762	-
	Viun6g03053	667	SUPERFAMILY	Nucleic acid-binding proteins	43	275	IPR012340	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun6g03053	Viun-Chr6	33104919	33112776	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun6g03053	37	660	Core DNA Replication Machinery Family	AT2G14050	74.603	0.0	967

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun6g03053	K10738		-	gmx:100776255	1078.93